GENA-LM: a family of open-source foundational DNA language models for long sequences
Recent advancements in genomics, propelled by artificial intelligence, have unlocked
unprecedented capabilities in interpreting genomic sequences, mitigating the need for …
unprecedented capabilities in interpreting genomic sequences, mitigating the need for …
Improving the performance of supervised deep learning for regulatory genomics using phylogenetic augmentation
Motivation Supervised deep learning is used to model the complex relationship between
genomic sequence and regulatory function. Understanding how these models make …
genomic sequence and regulatory function. Understanding how these models make …
Genomics of a sexually selected sperm ornament and female preference in Drosophila
Our understanding of animal ornaments and the mating preferences driving their
exaggeration is limited by knowledge of their genetics. Post-copulatory sexual selection is …
exaggeration is limited by knowledge of their genetics. Post-copulatory sexual selection is …
Phylogenomic Insights into the Evolution and Origin of nematoda
The phylum Nematoda represents one of the most cosmopolitan and abundant metazoans
on Earth. In this study, we reconstructed the first phylogenomic tree for phylum Nematoda. A …
on Earth. In this study, we reconstructed the first phylogenomic tree for phylum Nematoda. A …
Experimental horizontal transfer of phage-derived genes to Drosophila confers innate immunity to parasitoids
RL Tarnopol, JA Tamsil, G Cinege, JH Ha, KI Verster… - Current Biology, 2024 - cell.com
Metazoan parasites have played a major role in shaping innate immunity in animals. Insect
hosts and parasitoid wasps are excellent models for illuminating how animal innate immune …
hosts and parasitoid wasps are excellent models for illuminating how animal innate immune …
Whole genome phylogenomics helps to resolve the phylogenetic position of the Zygothrica genus group (Diptera, Drosophilidae) and the causes of previous …
MH Bessa, MS Gottschalk, LJ Robe - Molecular Phylogenetics and …, 2024 - Elsevier
Abstract Incomplete Lineage Sorting (ILS) and introgression are among the two main factors
causing incongruence between gene and species trees. Advances in phylogenomic studies …
causing incongruence between gene and species trees. Advances in phylogenomic studies …
Genital coupling and copulatory wounding in the Drosophila rufa species complex: comparison with the D. auraria species complex (Diptera: Drosophilidae)
In sexually reproducing animals, genital morphology is usually divergent among closely
related species, which can lead to a mismatch of genital coupling (ie mechanical isolation) …
related species, which can lead to a mismatch of genital coupling (ie mechanical isolation) …
PLOS Biology and the life sciences in 2024
D Routledge, PLOS Biology Staff Editors - PLoS biology, 2024 - journals.plos.org
PLOS Biology and the life sciences in 2024 | PLOS Biology Skip to main content
Advertisement PLOS Biology Browse Current Issue Journal Archive Collections Find and …
Advertisement PLOS Biology Browse Current Issue Journal Archive Collections Find and …
Molecular phylogeny and species diversity of the genus Dichaetophora Duda and related taxa (Diptera: Drosophilidae)
TK Katoh, JM Chen, JH Yang, G Zhang, L Wang… - Molecular Phylogenetics …, 2024 - Elsevier
Our intensive surveys of wild drosophilids in East and Southeast Asia discovered a great
species diversity (more than 100 putatively new species) of the genus Dichaetophora, which …
species diversity (more than 100 putatively new species) of the genus Dichaetophora, which …
FlaHMM: unistrand flamenco-like piRNA cluster prediction in Drosophila species using hidden Markov models
PIWI-interacting RNAs (piRNAs) are a class of small non-coding RNAs that are essential for
transposon control in animal gonads. In Drosophila ovarian somatic cells, piRNAs are …
transposon control in animal gonads. In Drosophila ovarian somatic cells, piRNAs are …