Mass spectrometry-based protein footprinting for higher-order structure analysis: fundamentals and applications

XR Liu, MM Zhang, ML Gross - Chemical reviews, 2020 - ACS Publications
Proteins adopt different higher-order structures (HOS) to enable their unique biological
functions. Understanding the complexities of protein higher-order structures and dynamics …

Predicting the structures of glycans, glycoproteins, and their complexes

RJ Woods - Chemical reviews, 2018 - ACS Publications
Complex carbohydrates are ubiquitous in nature, and together with proteins and nucleic
acids they comprise the building blocks of life. But unlike proteins and nucleic acids …

Quantification of the impact of the HIV-1-glycan shield on antibody elicitation

T Zhou, NA Doria-Rose, C Cheng, GBE Stewart-Jones… - Cell reports, 2017 - cell.com
While the HIV-1-glycan shield is known to shelter Env from the humoral immune response,
its quantitative impact on antibody elicitation has been unclear. Here, we use targeted …

Fast photochemical oxidation of proteins (FPOP): A powerful mass spectrometry–based structural proteomics tool

DT Johnson, LH Di Stefano, LM Jones - Journal of Biological Chemistry, 2019 - ASBMB
Fast photochemical oxidation of proteins (FPOP) is a MS-based method that has proved
useful in studies of protein structures, interactions, conformations, and protein folding. The …

Illuminating biological interactions with in vivo protein footprinting

JA Espino, LM Jones - Analytical Chemistry, 2019 - ACS Publications
Protein footprinting coupled with mass spectrometry is being increasingly used for the study
of protein interactions and conformations. The hydroxyl radical footprinting method, fast …

Predicting protein complex structure from surface-induced dissociation mass spectrometry data

JT Seffernick, SR Harvey, VH Wysocki… - ACS central …, 2019 - ACS Publications
Recently, mass spectrometry (MS) has become a viable method for elucidation of protein
structure. Surface-induced dissociation (SID), colliding multiply charged protein complexes …

Recent advances in structural mass spectrometry methods in the context of biosimilarity assessment: from sequence heterogeneities to higher order structures

J Castel, S Delaux, O Hernandez-Alba… - … of Pharmaceutical and …, 2023 - Elsevier
Biotherapeutics and their biosimilar versions have been flourishing in the biopharmaceutical
market for several years. Structural and functional characterization is needed to achieve …

Glycosylation influences activity, stability and immobilization of the feruloyl esterase 1a from Myceliophthora thermophila

C Bonzom, S Hüttner, E Mirgorodskaya, SL Chong… - AMB Express, 2019 - Springer
Heterologous protein production is widely used in industrial biotechnology. However, using
non-native production hosts can lead to enzymes with altered post-translational …

Structural investigation of therapeutic antibodies using hydroxyl radical protein footprinting methods

CY Ralston, JS Sharp - Antibodies, 2022 - mdpi.com
Commercial monoclonal antibodies are growing and important components of modern
therapies against a multitude of human diseases. Well-known high-resolution structural …

All-atom virus simulations

JA Hadden, JR Perilla - Current opinion in virology, 2018 - Elsevier
Highlights•Viral protein simulations are among the largest all-atom simulations ever
published.•All-atom simulations reveal the dynamics of viral proteins at chemical …