Mass spectrometry-based protein footprinting for higher-order structure analysis: fundamentals and applications
Proteins adopt different higher-order structures (HOS) to enable their unique biological
functions. Understanding the complexities of protein higher-order structures and dynamics …
functions. Understanding the complexities of protein higher-order structures and dynamics …
Predicting the structures of glycans, glycoproteins, and their complexes
RJ Woods - Chemical reviews, 2018 - ACS Publications
Complex carbohydrates are ubiquitous in nature, and together with proteins and nucleic
acids they comprise the building blocks of life. But unlike proteins and nucleic acids …
acids they comprise the building blocks of life. But unlike proteins and nucleic acids …
Quantification of the impact of the HIV-1-glycan shield on antibody elicitation
While the HIV-1-glycan shield is known to shelter Env from the humoral immune response,
its quantitative impact on antibody elicitation has been unclear. Here, we use targeted …
its quantitative impact on antibody elicitation has been unclear. Here, we use targeted …
Fast photochemical oxidation of proteins (FPOP): A powerful mass spectrometry–based structural proteomics tool
DT Johnson, LH Di Stefano, LM Jones - Journal of Biological Chemistry, 2019 - ASBMB
Fast photochemical oxidation of proteins (FPOP) is a MS-based method that has proved
useful in studies of protein structures, interactions, conformations, and protein folding. The …
useful in studies of protein structures, interactions, conformations, and protein folding. The …
Illuminating biological interactions with in vivo protein footprinting
Protein footprinting coupled with mass spectrometry is being increasingly used for the study
of protein interactions and conformations. The hydroxyl radical footprinting method, fast …
of protein interactions and conformations. The hydroxyl radical footprinting method, fast …
Predicting protein complex structure from surface-induced dissociation mass spectrometry data
Recently, mass spectrometry (MS) has become a viable method for elucidation of protein
structure. Surface-induced dissociation (SID), colliding multiply charged protein complexes …
structure. Surface-induced dissociation (SID), colliding multiply charged protein complexes …
Recent advances in structural mass spectrometry methods in the context of biosimilarity assessment: from sequence heterogeneities to higher order structures
J Castel, S Delaux, O Hernandez-Alba… - … of Pharmaceutical and …, 2023 - Elsevier
Biotherapeutics and their biosimilar versions have been flourishing in the biopharmaceutical
market for several years. Structural and functional characterization is needed to achieve …
market for several years. Structural and functional characterization is needed to achieve …
Glycosylation influences activity, stability and immobilization of the feruloyl esterase 1a from Myceliophthora thermophila
Heterologous protein production is widely used in industrial biotechnology. However, using
non-native production hosts can lead to enzymes with altered post-translational …
non-native production hosts can lead to enzymes with altered post-translational …
Structural investigation of therapeutic antibodies using hydroxyl radical protein footprinting methods
CY Ralston, JS Sharp - Antibodies, 2022 - mdpi.com
Commercial monoclonal antibodies are growing and important components of modern
therapies against a multitude of human diseases. Well-known high-resolution structural …
therapies against a multitude of human diseases. Well-known high-resolution structural …
All-atom virus simulations
JA Hadden, JR Perilla - Current opinion in virology, 2018 - Elsevier
Highlights•Viral protein simulations are among the largest all-atom simulations ever
published.•All-atom simulations reveal the dynamics of viral proteins at chemical …
published.•All-atom simulations reveal the dynamics of viral proteins at chemical …