Protein design: From the aspect of water solubility and stability

R Qing, S Hao, E Smorodina, D Jin, A Zalevsky… - Chemical …, 2022 - ACS Publications
Water solubility and structural stability are key merits for proteins defined by the primary
sequence and 3D-conformation. Their manipulation represents important aspects of the …

Refolding techniques for recovering biologically active recombinant proteins from inclusion bodies

H Yamaguchi, M Miyazaki - Biomolecules, 2014 - mdpi.com
Biologically active proteins are useful for studying the biological functions of genes and for
the development of therapeutic drugs and biomaterials in a biotechnology industry …

Heterogeneity in protein folding and unfolding reactions

S Bhatia, JB Udgaonkar - Chemical Reviews, 2022 - ACS Publications
Proteins have dynamic structures that undergo chain motions on time scales spanning from
picoseconds to seconds. Resolving the resultant conformational heterogeneity is essential …

Alternative Conformations of Cytochrome c: Structure, Function, and Detection

L Hannibal, F Tomasina, DA Capdevila… - Biochemistry, 2016 - ACS Publications
Cytochrome c (cyt c) is a cationic hemoprotein of∼ 100 amino acid residues that exhibits
exceptional functional versatility. While its primary function is electron transfer in the …

Application of conventional molecular dynamics simulation in evaluating the stability of apomyoglobin in urea solution

D Zhang, R Lazim - Scientific Reports, 2017 - nature.com
In this study, we had exploited the advancement in computer technology to determine the
stability of four apomyoglobin variants namely wild type, E109A, E109G and G65A/G73A by …

Solubility and Molecular Conformations of n-Alkane Chains in Water

AL Ferguson, PG Debenedetti… - The Journal of …, 2009 - ACS Publications
We employ molecular dynamics simulations to study the solubility and molecular
conformations of n-alkane chains in water. We find nearly exponential decrease in solubility …

Real-time monitoring of hydrophobic aggregation reveals a critical role of cooperativity in hydrophobic effect

L Jiang, S Cao, PPH Cheung, X Zheng… - Nature …, 2017 - nature.com
The hydrophobic interaction drives nonpolar solutes to aggregate in aqueous solution, and
hence plays a critical role in many fundamental processes in nature. An important property …

When fast is better: protein folding fundamentals and mechanisms from ultrafast approaches

V Munoz, M Cerminara - Biochemical Journal, 2016 - portlandpress.com
Protein folding research stalled for decades because conventional experiments indicated
that proteins fold slowly and in single strokes, whereas theory predicted a complex interplay …

Translation and folding of single proteins in real time

F Wruck, A Katranidis, KH Nierhaus… - Proceedings of the …, 2017 - National Acad Sciences
Protein biosynthesis is inherently coupled to cotranslational protein folding. Folding of the
nascent chain already occurs during synthesis and is mediated by spatial constraints …

How cooperative are protein folding and unfolding transitions?

P Malhotra, JB Udgaonkar - Protein Science, 2016 - Wiley Online Library
A thermodynamically and kinetically simple picture of protein folding envisages only two
states, native (N) and unfolded (U), separated by a single activation free energy barrier, and …