DNA confinement in nanochannels: physics and biological applications

W Reisner, JN Pedersen… - Reports on progress in …, 2012 - iopscience.iop.org
DNA is the central storage molecule of genetic information in the cell, and reading that
information is a central problem in biology. While sequencing technology has made …

Beyond gel electrophoresis: Microfluidic separations, fluorescence burst analysis, and DNA stretching

KD Dorfman, SB King, DW Olson, JDP Thomas… - Chemical …, 2013 - ACS Publications
This Review addresses methods for obtaining sequence information directly from
unamplified genomic length DNA. Our generic starting point is a large piece of DNA that …

Optical DNA mapping in nanofluidic devices: principles and applications

V Müller, F Westerlund - Lab on a Chip, 2017 - pubs.rsc.org
Optical DNA mapping has over the last decade emerged as a very powerful tool for
obtaining long range sequence information from single DNA molecules. In optical DNA …

Single-molecule optical genome mapping in nanochannels: multidisciplinarity at the nanoscale

J Jeffet, S Margalit, Y Michaeli… - Essays in …, 2021 - portlandpress.com
The human genome contains multiple layers of information that extend beyond the genetic
sequence. In fact, identical genetics do not necessarily yield identical phenotypes as evident …

Beyond sequencing: optical mapping of DNA in the age of nanotechnology and nanoscopy

M Levy-Sakin, Y Ebenstein - Current opinion in biotechnology, 2013 - Elsevier
Next generation sequencing (NGS) is revolutionizing all fields of biological research but it
fails to extract the full range of information associated with genetic material. Optical mapping …

Methyltransferase‐Directed Labeling of Biomolecules and its Applications

J Deen, C Vranken, V Leen, RK Neely… - Angewandte Chemie …, 2017 - Wiley Online Library
Methyltransferases (MTases) form a large family of enzymes that methylate a diverse set of
targets, ranging from the three major biopolymers to small molecules. Most of these MTases …

Current and emerging challenges of field effect transistor based bio-sensing

A Matsumoto, Y Miyahara - Nanoscale, 2013 - pubs.rsc.org
Field-effect-transistor (FET) based electrical signal transduction is an increasingly prevalent
strategy for bio-sensing. This technique, often termed “Bio-FETs”, provides an essentially …

Probing protein–DNA interactions and compaction in nanochannels

R Riehn - Current Opinion in Structural Biology, 2024 - Elsevier
DNA confined to nanofluidic channels with a cross-section from tens to hundreds of nm wide
and hundreds of microns long stretches in an equilibrium process free of flow or end …

Micro-and nanoscale devices for the investigation of epigenetics and chromatin dynamics

CA Aguilar, HG Craighead - Nature nanotechnology, 2013 - nature.com
Deoxyribonucleic acid (DNA) is the blueprint on which life is based and transmitted, but the
way in which chromatin—a dynamic complex of nucleic acids and proteins—is packaged …

LoMA-B: a simple and versatile lab-on-a-chip system based on single-channel bisulfite conversion for DNA methylation analysis

J Yoon, MK Park, TY Lee, YJ Yoon, Y Shin - Lab on a Chip, 2015 - pubs.rsc.org
Miniaturized lab-on-a-chip (LOC) systems have been developed for genetic and epigenetic
analyses in clinical applications because of advantages such as reduced sample size and …