Detecting RNA modifications in the epitranscriptome: predict and validate

M Helm, Y Motorin - Nature Reviews Genetics, 2017 - nature.com
RNA modifications are emerging players in the field of post-transcriptional regulation of
gene expression, and are attracting a comparable degree of research interest to DNA and …

Time-resolved single-cell RNA-seq using metabolic RNA labelling

F Erhard, AE Saliba, A Lusser, C Toussaint… - Nature Reviews …, 2022 - nature.com
Single-cell RNA genomics technologies are revolutionizing biomedical science by profiling
single cells with unprecedented resolution, providing fundamental insights into the role of …

Integrator endonuclease drives promoter-proximal termination at all RNA polymerase II-transcribed loci

CB Stein, AR Field, CA Mimoso, CC Zhao, KL Huang… - Molecular cell, 2022 - cell.com
Summary RNA polymerase II (RNAPII) pausing in early elongation is critical for gene
regulation. Paused RNAPII can be released into productive elongation by the kinase P-TEFb …

[HTML][HTML] Enhancer RNA m6A methylation facilitates transcriptional condensate formation and gene activation

JH Lee, R Wang, F Xiong, J Krakowiak, Z Liao… - Molecular cell, 2021 - cell.com
The mechanistic understanding of nascent RNAs in transcriptional control remains limited.
Here, by a high sensitivity method methylation-inscribed nascent transcripts sequencing …

Loss of a mammalian circular RNA locus causes miRNA deregulation and affects brain function

M Piwecka, P Glažar, LR Hernandez-Miranda… - Science, 2017 - science.org
INTRODUCTION Recently, a special class of RNAs has excited researchers and triggered
hundreds of now-published studies. Known as circular RNAs (circRNAs), these RNAs are …

m6A mRNA methylation controls T cell homeostasis by targeting the IL-7/STAT5/SOCS pathways

HB Li, J Tong, S Zhu, PJ Batista, EE Duffy, J Zhao… - Nature, 2017 - nature.com
Abstract N 6-methyladenosine (m6A) is the most common and abundant messenger RNA
modification, modulated by 'writers','erasers' and 'readers' of this mark,. In vitro data have …

[HTML][HTML] A network of noncoding regulatory RNAs acts in the mammalian brain

B Kleaveland, CY Shi, J Stefano, DP Bartel - Cell, 2018 - cell.com
Noncoding RNAs (ncRNAs) play increasingly appreciated gene-regulatory roles. Here, we
describe a regulatory network centered on four ncRNAs—a long ncRNA, a circular RNA …

Temporal control of mammalian cortical neurogenesis by m6A methylation

KJ Yoon, FR Ringeling, C Vissers, F Jacob, M Pokrass… - Cell, 2017 - cell.com
Summary N 6-methyladenosine (m 6 A), installed by the Mettl3/Mettl14 methyltransferase
complex, is the most prevalent internal mRNA modification. Whether m 6 A regulates …

Thiol-linked alkylation of RNA to assess expression dynamics

VA Herzog, B Reichholf, T Neumann, P Rescheneder… - Nature …, 2017 - nature.com
Gene expression profiling by high-throughput sequencing reveals qualitative and
quantitative changes in RNA species at steady state but obscures the intracellular dynamics …

Promoter of lncRNA gene PVT1 is a tumor-suppressor DNA boundary element

SW Cho, J Xu, R Sun, MR Mumbach, AC Carter… - Cell, 2018 - cell.com
Noncoding mutations in cancer genomes are frequent but challenging to interpret. PVT1
encodes an oncogenic lncRNA, but recurrent translocations and deletions in human cancers …