Epiproteomics: quantitative analysis of histone marks and codes by mass spectrometry

Y Zheng, X Huang, NL Kelleher - Current opinion in chemical biology, 2016 - Elsevier
Highlights•A useful reference for quantitative analysis of histone modifications.•Three
general approaches to analyze histone modifications by mass spectrometry.•Analytical …

Bottom-up proteomics (2013–2015): keeping up in the era of systems biology

J Mayne, Z Ning, X Zhang, AE Starr, R Chen… - Analytical …, 2016 - ACS Publications
Over 17,000 papers related to proteomics have been published since our 2011− 2013
review. A subset are true gems reporting amazing applications of proteomics to better …

Analysis of human acetylation stoichiometry defines mechanistic constraints on protein regulation

BK Hansen, R Gupta, L Baldus, D Lyon, T Narita… - Nature …, 2019 - nature.com
Lysine acetylation is a reversible posttranslational modification that occurs at thousands of
sites on human proteins. However, the stoichiometry of acetylation remains poorly …

EpiProfile 2.0: a computational platform for processing epi-proteomics mass spectrometry data

ZF Yuan, S Sidoli, DM Marchione… - Journal of proteome …, 2018 - ACS Publications
Epigenetics has become a fundamental scientific discipline with various implications for
biology and medicine. Epigenetic marks, mostly DNA methylation and histone post …

Dynamic protein deacetylation is a limited carbon source for acetyl-CoA–dependent metabolism

I Soaita, E Megill, D Kantner, A Chatoff… - Journal of Biological …, 2023 - ASBMB
The ability of cells to store and rapidly mobilize energy reserves in response to nutrient
availability is essential for survival. Breakdown of carbon stores produces acetyl-CoA …

Epigenetic regulation of skeletal muscle metabolism

KF Howlett, SL McGee - Clinical Science, 2016 - portlandpress.com
Normal skeletal muscle metabolism is essential for whole body metabolic homoeostasis and
disruptions in muscle metabolism are associated with a number of chronic diseases …

Identification of absolute geometries of cis and trans molecular isomers by Coulomb Explosion Imaging

U Ablikim, C Bomme, H Xiong, E Savelyev, R Obaid… - Scientific reports, 2016 - nature.com
An experimental route to identify and separate geometric isomers by means of coincident
Coulomb explosion imaging is presented, allowing isomer-resolved photoionization studies …

Epigenetic code: histone modification, gene regulation, and chromatin dynamics

A Bhan, P Deb, SS Mandal - Gene regulation, epigenetics and …, 2017 - Wiley Online Library
In eukaryotic organisms, DNA is not free rather present as a highly complex structure called
chromatin. This chapter reviews different posttranslation modifications of histone proteins …

Differential ion mobility separations in the low-pressure regime

AA Shvartsburg, A Haris, R Andrzejewski… - Analytical …, 2017 - ACS Publications
Ion mobility spectrometry (IMS) in conjunction with mass spectrometry (MS) has emerged as
a powerful platform for biological and environmental analyses. An inherent advantage of …

Creation of a Yeast Strain with Co‐Translationally Acylated Nucleosomes

D Wu, Y Zhang, Z Tang, X Chen, X Ling, L Li… - Angewandte …, 2022 - Wiley Online Library
Structurally diverse acylations have been identified as post‐translational modifications
(PTMs) on histone lysine residues, but their functions and regulations remain largely …