Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature

PG Arnison, MJ Bibb, G Bierbaum, AA Bowers… - Natural product …, 2013 - pubs.rsc.org
Covering: 1988 to 2012 This review presents recommended nomenclature for the
biosynthesis of ribosomally synthesized and post-translationally modified peptides (RiPPs) …

[HTML][HTML] Radical S-Adenosylmethionine Enzymes

JB Broderick, BR Duffus, KS Duschene… - Chemical …, 2014 - ACS Publications
It was once widely held that nearly all reactions in biology were catalyzed via mechanisms
involving paired electron species. Beginning approximately 40 years ago, this paradigm was …

Structure and biosynthesis of a macrocyclic peptide containing an unprecedented lysine-to-tryptophan crosslink

KR Schramma, LB Bushin, MR Seyedsayamdost - Nature chemistry, 2015 - nature.com
Streptococcal bacteria use peptide signals as a means of intraspecies communication.
These peptides can contain unusual post-translational modifications, providing opportunities …

Methylthioadenosine/S‐adenosylhomocysteine nucleosidase, a critical enzyme for bacterial metabolism

N Parveen, KA Cornell - Molecular microbiology, 2011 - Wiley Online Library
The importance of methylthioadenosine/S‐adenosylhomocysteine (MTA/SAH) nucleosidase
in bacteria has started to be appreciated only in the past decade. A comprehensive analysis …

A prominent glycyl radical enzyme in human gut microbiomes metabolizes trans-4-hydroxy-l-proline

BJ Levin, YY Huang, SC Peck, Y Wei… - Science, 2017 - science.org
INTRODUCTION The microbes that live in and on our bodies (the human microbiome)
profoundly affect human health and disease. For example, within the lower gastrointestinal …

Intrigues and intricacies of the biosynthetic pathways for the enzymatic quinocofactors: PQQ, TTQ, CTQ, TPQ, and LTQ

JP Klinman, F Bonnot - Chemical reviews, 2014 - ACS Publications
Protein and nucleic acid modification processes play a central role in cellular viability. These
range from the regulation of transcription via the modification of DNA, 1 the splicing of RNA …

[HTML][HTML] SPASM and twitch domains in S-adenosylmethionine (SAM) radical enzymes

TAJ Grell, PJ Goldman, CL Drennan - Journal of Biological Chemistry, 2015 - ASBMB
S-Adenosylmethionine (SAM, also known as AdoMet) radical enzymes use SAM and a [4Fe-
4S] cluster to catalyze a diverse array of reactions. They adopt a partial triose-phosphate …

Biosynthesis of 3-thia-α-amino acids on a carrier peptide

Y Yu, WA van der Donk - Proceedings of the National …, 2022 - National Acad Sciences
A subset of natural products, such as polyketides and nonribosomal peptides, is
biosynthesized while tethered to a carrier peptide via a thioester linkage. Recently, we …

Biological Systems Discovery In Silico: Radical S-Adenosylmethionine Protein Families and Their Target Peptides for Posttranslational Modification

DH Haft, MK Basu - Journal of bacteriology, 2011 - Am Soc Microbiol
Data mining methods in bioinformatics and comparative genomics commonly rely on
working definitions of protein families from prior computation. Partial phylogenetic profiling …

[HTML][HTML] Radical SAM enzymes in the biosynthesis of ribosomally synthesized and post-translationally modified peptides (RiPPs)

A Benjdia, C Balty, O Berteau - Frontiers in chemistry, 2017 - frontiersin.org
Ribosomally-synthesized and post-translationally modified peptides (RiPPs) are a large and
diverse family of natural products. They possess interesting biological properties such as …