Motif kernel generated by genetic programming improves remote homology and fold detection

T Håndstad, AJH Hestnes, P Sætrom - BMC bioinformatics, 2007 - Springer
Background Protein remote homology detection is a central problem in computational
biology. Most recent methods train support vector machines to discriminate between related …

Computational peptide discovery with a genetic programming approach

N Scalzitti, I Miralavy, DE Korenchan, CT Farrar… - Journal of Computer …, 2024 - Springer
The development of peptides for therapeutic targets or biomarkers for disease diagnosis is a
challenging task in protein engineering. Current approaches are tedious, often time …

Using genetic programming to predict and optimize protein function

I Miralavy, AR Bricco, AA Gilad, W Banzhaf - PeerJ Physical Chemistry, 2022 - peerj.com
Protein engineers conventionally use tools such as Directed Evolution to find new proteins
with better functionalities and traits. More recently, computational techniques and especially …

Motif finding using ant colony optimization

S Bouamama, A Boukerram… - Swarm Intelligence: 7th …, 2010 - Springer
A challenging problem in molecular biology is the identification of the specific binding sites
of transcription factors in the promoter regions of genes referred to as motifs. This paper …

Learning of glycan motifs using genetic programming and various fitness functions

T Miyahara, T Kuboyama - Journal of Advanced Computational …, 2014 - jstage.jst.go.jp
We apply a genetic programming approach to learning of glycan motifs by using tag tree
patterns and various fitness functions. Tag tree patterns obtained from some glycan data …

Genomic and proteomic databases: Foundations, current status and future applications

SB Navathe, U Patil, W Guan - Journal of Computing Science and …, 2007 - koreascience.kr
In this paper we have provided an extensive survey of the databases and other resources
related to the current research in bioinformatics and the issues that confront the database …

[PDF][PDF] Strategy based genetic algorithms approach in automated GUI testing

N Stoyanov - 2020 - research.tue.nl
GUI testing is often a human executed and expensive process. Thus, a lot of directions are
explored in order to automate it. One of those directions is using completely automated tools …

Computational peptide discovery with a genetic programming approach

Background The development of peptides for therapeutic targets or biomarkers for disease
diagnosis is a challenging task in protein engineering. Current approaches are tedious …

Comparison and fusion model in protein motifs

J Altamiranda, J Aguilar… - 2013 XXXIX Latin …, 2013 - ieeexplore.ieee.org
Motifs are useful in biology to highlight the nucleotides/amino-acids that are involved in
structure, function, regulation and evolution, or to infer homology between genes/proteins …

A context-aware fitness function based on feature selection for evolutionary learning of characteristic graph patterns

F Tokuhara, T Miyahara, T Kuboyama, Y Suzuki… - … and Database Systems …, 2017 - Springer
We propose a context-aware fitness function based on feature selection for evolutionary
learning of characteristic graph patterns. The proposed fitness function estimates the fitness …