Small RNAs in bacteria and archaea: who they are, what they do, and how they do it

EGH Wagner, P Romby - Advances in genetics, 2015 - Elsevier
Small RNAs are ubiquitously present regulators in all kingdoms of life. Most bacterial and
archaeal small RNAs (sRNAs) act by antisense mechanisms on multiple target mRNAs …

Hfq and its constellation of RNA

J Vogel, BF Luisi - Nature Reviews Microbiology, 2011 - nature.com
Hfq is an RNA-binding protein that is common to diverse bacterial lineages and has key
roles in the control of gene expression. By facilitating the pairing of small RNAs with their …

Global RNA recognition patterns of post‐transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo

E Holmqvist, PR Wright, L Li, T Bischler… - The EMBO …, 2016 - embopress.org
The molecular roles of many RNA‐binding proteins in bacterial post‐transcriptional gene
regulation are not well understood. Approaches combining in vivo UV crosslinking with RNA …

Hfq chaperone brings speed dating to bacterial sRNA

A Santiago‐Frangos… - Wiley Interdisciplinary …, 2018 - Wiley Online Library
Hfq is a ubiquitous, Sm‐like RNA binding protein found in most bacteria and some archaea.
Hfq binds small regulatory RNAs (sRNAs), facilitates base pairing between sRNAs and their …

Alternative Hfq‐sRNA interaction modes dictate alternative mRNA recognition

DJ Schu, A Zhang, S Gottesman, G Storz - The EMBO journal, 2015 - embopress.org
Many bacteria use small RNA s (sRNA s) and the RNA chaperone Hfq to regulate mRNA
stability and translation. Hfq, a ring‐shaped homohexamer, has multiple faces that can bind …

Bacterial small RNA-based negative regulation: Hfq and its accomplices

N De Lay, DJ Schu, S Gottesman - Journal of Biological Chemistry, 2013 - ASBMB
A large group of bacterial small regulatory RNAs (sRNAs) use the Hfq chaperone to mediate
pairing with and regulation of mRNAs. Recent findings help to clarify how Hfq acts and …

Guidelines for SHAPE reagent choice and detection strategy for RNA structure probing studies

S Busan, CA Weidmann, A Sengupta, KM Weeks - Biochemistry, 2019 - ACS Publications
Chemical probing is an important tool for characterizing the complex folded structures of
RNA molecules, many of which play key cellular roles. Electrophilic SHAPE reagents create …

The bacterial protein Hfq: much more than a mere RNA-binding factor

P Sobrero, C Valverde - Critical reviews in microbiology, 2012 - Taylor & Francis
Most of the sequenced bacterial genomes contain a gene encoding a protein known as Hfq
that resembles the eukaryotic RNA-binding proteins of the LSm family. It was originally …

C-terminal domain of the RNA chaperone Hfq drives sRNA competition and release of target RNA

A Santiago-Frangos, K Kavita… - Proceedings of the …, 2016 - National Acad Sciences
The bacterial Sm protein and RNA chaperone Hfq stabilizes small noncoding RNAs
(sRNAs) and facilitates their annealing to mRNA targets involved in stress tolerance and …

Mutations in interaction surfaces differentially impact E. coli Hfq association with small RNAs and their mRNA targets

A Zhang, DJ Schu, BC Tjaden, G Storz… - Journal of molecular …, 2013 - Elsevier
The RNA chaperone protein Hfq is required for the function of all small RNAs (sRNAs) that
regulate mRNA stability or translation by limited base pairing in Escherichia coli. While there …