[HTML][HTML] The origin, source, and cycling of methane in deep crystalline rock biosphere

R Kietäväinen, L Purkamo - Frontiers in microbiology, 2015 - frontiersin.org
The emerging interest in using stable bedrock formations for industrial purposes, eg, nuclear
waste disposal, has increased the need for understanding microbiological and geochemical …

Discovery, production and modification of five novel lantibiotics using the promiscuous nisin modification machinery

AJ van Heel, TG Kloosterman… - ACS synthetic …, 2016 - ACS Publications
To find the right conditions to isolate natively expressed antimicrobial peptides from a wide
range of different microorganisms can be a challenge. Here, we exploited a heterologous …

Blue: correcting sequencing errors using consensus and context

P Greenfield, K Duesing, A Papanicolaou… - …, 2014 - academic.oup.com
Motivation: Bioinformatics tools, such as assemblers and aligners, are expected to produce
more accurate results when given better quality sequence data as their starting point. This …

Heterotrophic communities supplied by ancient organic carbon predominate in deep Fennoscandian bedrock fluids

L Purkamo, M Bomberg, M Nyyssönen, I Kukkonen… - Microbial ecology, 2015 - Springer
The deep subsurface hosts diverse life, but the mechanisms that sustain this diversity remain
elusive. Here, we studied microbial communities involved in carbon cycling in deep, dark …

The Coal Seam Microbiome (CSMB) reference set, a lingua franca for the microbial coal-to-methane community

SHW Vick, P Greenfield, N Tran-Dinh, SG Tetu… - International Journal of …, 2018 - Elsevier
Microbial generation of methane from organic matter in coal represents an opportunity to
improve environmental and economic outcomes of coal seam gas production. This has …

[HTML][HTML] A bacterial riboswitch class for the thiamin precursor HMP-PP employs a terminator-embedded aptamer

RM Atilho, G Mirihana Arachchilage, EB Greenlee… - Elife, 2019 - elifesciences.org
We recently implemented a bioinformatics pipeline that can uncover novel, but rare,
riboswitch candidates as well as other noncoding RNA structures in bacteria. A prominent …

[HTML][HTML] Capturing prokaryotic dark matter genomes

C Gasc, C Ribière, N Parisot, R Beugnot, C Defois… - Research in …, 2015 - Elsevier
Prokaryotes are the most diverse and abundant cellular life forms on Earth. Most of them,
identified by indirect molecular approaches, belong to microbial dark matter. The advent of …

Who eats what? Unravelling microbial conversion of coal to methane

SHW Vick, S Gong, S Sestak, TJ Vergara… - FEMS microbiology …, 2019 - academic.oup.com
Microbial communities in subsurface coal seams are responsible for the conversion of coal
organic matter to methane. This process has important implications for both energy …

[HTML][HTML] The structure of MadC from Clostridium maddingley reveals new insights into class I lanthipeptide cyclases

CV Knospe, M Kamel, O Spitz, A Hoeppner… - Frontiers in …, 2023 - frontiersin.org
The rapid emergence of microbial multi-resistance against antibiotics has led to intense
search for alternatives. One of these alternatives are ribosomally synthesized and post …

Krumholzibacteriota and Deltaproteobacteria contain rare genetic potential to liberate carbon from monoaromatic compounds in subsurface coal seams

BC Campbell, P Greenfield, EP Barnhart, S Gong… - Mbio, 2024 - Am Soc Microbiol
Biogenic methane in subsurface coal seam environments is produced by diverse consortia
of microbes. Although this methane is useful for global energy security, it remains unclear …