The future of parentage analysis: From microsatellites to SNPs and beyond

SP Flanagan, AG Jones - Molecular ecology, 2019 - Wiley Online Library
Parentage analysis is a cornerstone of molecular ecology that has delivered fundamental
insights into behaviour, ecology and evolution. Microsatellite markers have long been the …

Strategies for determining kinship in wild populations using genetic data

V Städele, L Vigilant - Ecology and Evolution, 2016 - Wiley Online Library
Abstract Knowledge of kin relationships between members of wild animal populations has
broad application in ecology and evolution research by allowing the investigation of …

Pedigree reconstruction from SNP data: parentage assignment, sibship clustering and beyond

J Huisman - Molecular ecology resources, 2017 - Wiley Online Library
Data on hundreds or thousands of single nucleotide polymorphisms (SNPs) provide detailed
information about the relationships between individuals, but currently few tools can turn this …

Estimation of a Killer Whale (Orcinus orca) Population's Diet Using Sequencing Analysis of DNA from Feces

MJ Ford, J Hempelmann, MB Hanson, KL Ayres… - Plos one, 2016 - journals.plos.org
Estimating diet composition is important for understanding interactions between predators
and prey and thus illuminating ecosystem function. The diet of many species, however, is …

PRIMUS: rapid reconstruction of pedigrees from genome-wide estimates of identity by descent

J Staples, D Qiao, MH Cho, EK Silverman… - The American Journal of …, 2014 - cell.com
Understanding and correctly utilizing relatedness among samples is essential for genetic
analysis; however, managing sample records and pedigrees can often be error prone and …

Wild pedigrees inform mutation rates and historic abundance in baleen whales

M Suárez-Menéndez, M Bérubé, F Furni… - Science, 2023 - science.org
Phylogeny-based estimates suggesting a low germline mutation rate (μ) in baleen whales
have influenced research ranging from assessments of whaling impacts to evolutionary …

Inbreeding in an endangered killer whale population

MJ Ford, KM Parsons, EJ Ward… - Animal …, 2018 - Wiley Online Library
There are genetic risks associated with small population sizes, including loss of genetic
diversity and inbreeding depression. The southern resident killer whale Orcinus orca …

Reduced relative fitness in hatchery‐origin Pink Salmon in two streams in Prince William Sound, Alaska

KR Shedd, EA Lescak, C Habicht… - Evolutionary …, 2022 - Wiley Online Library
Previous studies generally report that hatchery‐origin Pacific Salmon (Oncorhynchus spp.)
have lower relative reproductive success (RRS) than their natural‐origin counterparts. We …

Viability criteria for steelhead within the Puget Sound distinct population segment

JJ Hard, JM Myers, EJ Connor, RA Hayman, RG Kope… - 2015 - repository.library.noaa.gov
Under the US Endangered Species Act (ESA), the National Oceanographic and
Atmospheric Administration's National Marine Fisheries Service (NMFS) is required to …

Early male maturity explains a negative correlation in reproductive success between hatchery‐spawned salmon and their naturally spawning progeny

M Ford, A Murdoch, S Howard - Conservation Letters, 2012 - Wiley Online Library
Adaptation of plants or animals to captivity is a risk associated with any captive breeding
program that has the intent of returning organisms to the wild. The risk is particularly acute …