Genome-scale models in human metabologenomics
A Mardinoglu, BØ Palsson - Nature Reviews Genetics, 2024 - nature.com
Metabologenomics integrates metabolomics with other omics data types to comprehensively
study the genetic and environmental factors that influence metabolism. These multi-omics …
study the genetic and environmental factors that influence metabolism. These multi-omics …
Progress in toxicogenomics to protect human health
Toxicogenomics measures molecular features, such as transcripts, proteins, metabolites and
epigenomic modifications, to understand and predict the toxicological effects of …
epigenomic modifications, to understand and predict the toxicological effects of …
The 2022 Nucleic Acids Research database issue and the online molecular biology database collection
DJ Rigden, XM Fernández - Nucleic acids research, 2022 - academic.oup.com
Abstract The 2022 Nucleic Acids Research Database Issue contains 185 papers, including
87 papers reporting on new databases and 85 updates from resources previously published …
87 papers reporting on new databases and 85 updates from resources previously published …
The STRING database in 2025: protein networks with directionality of regulation
Proteins cooperate, regulate and bind each other to achieve their functions. Understanding
the complex network of their interactions is essential for a systems-level description of …
the complex network of their interactions is essential for a systems-level description of …
Sodium-glucose cotransporter 2 inhibitors induce anti-inflammatory and anti-ferroptotic shift in epicardial adipose tissue of subjects with severe heart failure
BJ Kasperova, M Mraz, P Svoboda, D Hlavacek… - Cardiovascular …, 2024 - Springer
Background Sodium-glucose cotransporter 2 inhibitors (SGLT-2i) are glucose-lowering
agents used for the treatment of type 2 diabetes mellitus, which also improve heart failure …
agents used for the treatment of type 2 diabetes mellitus, which also improve heart failure …
CCPA: cloud-based, self-learning modules for consensus pathway analysis using GO, KEGG and Reactome
This manuscript describes the development of a resource module that is part of a learning
platform named 'NIGMS Sandbox for Cloud-based Learning'(https://github …
platform named 'NIGMS Sandbox for Cloud-based Learning'(https://github …
Neuromodulator regulation and emotions: insights from the crosstalk of cell signaling
D Tsuboi, T Nagai, J Yoshimoto… - Frontiers in Molecular …, 2024 - frontiersin.org
The unraveling of the regulatory mechanisms that govern neuronal excitability is a major
challenge for neuroscientists worldwide. Neurotransmitters play a critical role in maintaining …
challenge for neuroscientists worldwide. Neurotransmitters play a critical role in maintaining …
Complex portal 2025: predicted human complexes and enhanced visualisation tools for the comparison of orthologous and paralogous complexes
S Balu, S Huget, JJ Medina Reyes… - Nucleic Acids …, 2024 - academic.oup.com
Abstract The Complex Portal (www. ebi. ac. uk/complexportal) is a manually curated
reference database for molecular complexes. It is a unifying web resource linking …
reference database for molecular complexes. It is a unifying web resource linking …
Developing transcriptomic signatures as a biomarker of cellular senescence
S Mahmud, LE Pitcher, E Torbenson… - Ageing Research …, 2024 - Elsevier
Cellular senescence is a cell fate driven by different types of stress, where damaged cells
exit from the cell cycle and, in many cases, develop an inflammatory senescence-associated …
exit from the cell cycle and, in many cases, develop an inflammatory senescence-associated …
Gastrulation-stage gene expression in Nipbl+/− mouse embryos foreshadows the development of syndromic birth defects
S Chea, J Kreger, ME Lopez-Burks, AL MacLean… - Science …, 2024 - science.org
In animal models, Nipbl deficiency phenocopies gene expression changes and birth defects
seen in Cornelia de Lange syndrome, the most common cause of which is Nipbl …
seen in Cornelia de Lange syndrome, the most common cause of which is Nipbl …