New technologies to assess genotype–phenotype relationships

BR Bochner - Nature Reviews Genetics, 2003 - nature.com
The accelerating pace of the discovery of genes has far surpassed our capabilities to
understand their biological function—in other words, the phenotypes they engender. We …

Role of cultivation media in the development of yeast strains for large scale industrial use

B Hahn-Hägerdal, K Karhumaa, CU Larsson… - Microbial cell …, 2005 - Springer
The composition of cultivation media in relation to strain development for industrial
application is reviewed. Heterologous protein production and pentose utilization by …

General calibration of microbial growth in microplate readers

K Stevenson, AF McVey, IBN Clark, PS Swain… - Scientific reports, 2016 - nature.com
Optical density (OD) measurements of microbial growth are one of the most common
techniques used in microbiology, with applications ranging from studies of antibiotic efficacy …

Growth rates made easy

BG Hall, H Acar, A Nandipati… - Molecular biology and …, 2014 - academic.oup.com
Abstract In the 1960s–1980s, determination of bacterial growth rates was an important tool
in microbial genetics, biochemistry, molecular biology, and microbial physiology. The …

The origin and adaptive evolution of domesticated populations of yeast from Far East Asia

SF Duan, PJ Han, QM Wang, WQ Liu, JY Shi… - Nature …, 2018 - nature.com
The yeast Saccharomyces cerevisiae has been an essential component of human
civilization because of its long global history of use in food and beverage fermentation …

Population genomics of domestic and wild yeasts

G Liti, DM Carter, AM Moses, J Warringer, L Parts… - Nature, 2009 - nature.com
Since the completion of the genome sequence of Saccharomyces cerevisiae in 1996 (refs),
there has been a large increase in complete genome sequences, accompanied by great …

Antagonism between bacteriostatic and bactericidal antibiotics is prevalent

PS Ocampo, V Lázár, B Papp, M Arnoldini… - Antimicrobial agents …, 2014 - Am Soc Microbiol
Combination therapy is rarely used to counter the evolution of resistance in bacterial
infections. Expansion of the use of combination therapy requires knowledge of how drugs …

[HTML][HTML] Contrasting evolutionary genome dynamics between domesticated and wild yeasts

JX Yue, J Li, L Aigrain, J Hallin, K Persson, K Oliver… - Nature …, 2017 - nature.com
Structural rearrangements have long been recognized as an important source of genetic
variation, with implications in phenotypic diversity and disease, yet their detailed …

Systematic exploration of essential yeast gene function with temperature-sensitive mutants

Z Li, FJ Vizeacoumar, S Bahr, J Li, J Warringer… - Nature …, 2011 - nature.com
Conditional temperature-sensitive (ts) mutations are valuable reagents for studying essential
genes in the yeast Saccharomyces cerevisiae. We constructed 787 ts strains, covering 497 …

Phenotypic heterogeneity promotes adaptive evolution

Z Bódi, Z Farkas, D Nevozhay, D Kalapis, V Lázár… - PLoS …, 2017 - journals.plos.org
Genetically identical cells frequently display substantial heterogeneity in gene expression,
cellular morphology and physiology. It has been suggested that by rapidly generating a …