Shadow enhancers: Frequently asked questions about distributed cis‐regulatory information and enhancer redundancy
S Barolo - Bioessays, 2012 - Wiley Online Library
This paper, in the form of a frequently asked questions page (FAQ), addresses outstanding
questions about “shadow enhancers”, quasi‐redundant cis‐regulatory elements, and their …
questions about “shadow enhancers”, quasi‐redundant cis‐regulatory elements, and their …
A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs
G Andrey, T Montavon, B Mascrez, F Gonzalez… - Science, 2013 - science.org
Introduction During vertebrate limb development, gene members of the HoxD cluster are
transcribed in two subsequent waves, following a collinear strategy. Early on, genes located …
transcribed in two subsequent waves, following a collinear strategy. Early on, genes located …
[HTML][HTML] A regulatory archipelago controls Hox genes transcription in digits
T Montavon, N Soshnikova, B Mascrez, E Joye… - Cell, 2011 - cell.com
The evolution of digits was an essential step in the success of tetrapods. Among the key
players, Hoxd genes are coordinately regulated in developing digits, where they help …
players, Hoxd genes are coordinately regulated in developing digits, where they help …
Evolutionary changes in promoter and enhancer activity during human corticogenesis
Human higher cognition is attributed to the evolutionary expansion and elaboration of the
human cerebral cortex. However, the genetic mechanisms contributing to these …
human cerebral cortex. However, the genetic mechanisms contributing to these …
Conserved non-coding elements and cis regulation: actions speak louder than words
AC Nelson, FC Wardle - Development, 2013 - journals.biologists.com
It is a truth (almost) universally acknowledged that conserved non-coding genomic
sequences function in the cis regulation of neighbouring genes. But is this a misconception …
sequences function in the cis regulation of neighbouring genes. But is this a misconception …
SOX2 co-occupies distal enhancer elements with distinct POU factors in ESCs and NPCs to specify cell state
SOX2 is a master regulator of both pluripotent embryonic stem cells (ESCs) and multipotent
neural progenitor cells (NPCs); however, we currently lack a detailed understanding of how …
neural progenitor cells (NPCs); however, we currently lack a detailed understanding of how …
Convergent evolution of complex regulatory landscapes and pleiotropy at Hox loci
Hox genes are required during the morphogenesis of both vertebrate digits and external
genitals. We investigated whether transcription in such distinct contexts involves a shared …
genitals. We investigated whether transcription in such distinct contexts involves a shared …
Attenuated sensing of SHH by Ptch1 underlies evolution of bovine limbs
J Lopez-Rios, A Duchesne, D Speziale, G Andrey… - Nature, 2014 - nature.com
The large spectrum of limb morphologies reflects the wide evolutionary diversification of the
basic pentadactyl pattern in tetrapods. In even-toed ungulates (artiodactyls, including cattle) …
basic pentadactyl pattern in tetrapods. In even-toed ungulates (artiodactyls, including cattle) …
[HTML][HTML] Stage-specific deletion of Olig2 conveys opposing functions on differentiation and maturation of oligodendrocytes
F Mei, H Wang, S Liu, J Niu, L Wang, Y He… - Journal of …, 2013 - Soc Neuroscience
The temporal and spatial patterning involved in the specification, differentiation, and
myelination by oligodendroglia is coordinated in part by the activation and repression of …
myelination by oligodendroglia is coordinated in part by the activation and repression of …
Multiple enhancers regulate Hoxd genes and the Hotdog LncRNA during cecum budding
Hox genes are required for the development of the intestinal cecum, a major organ of plant-
eating species. We have analyzed the transcriptional regulation of Hoxd genes in cecal …
eating species. We have analyzed the transcriptional regulation of Hoxd genes in cecal …