Shadow enhancers: Frequently asked questions about distributed cis‐regulatory information and enhancer redundancy

S Barolo - Bioessays, 2012 - Wiley Online Library
This paper, in the form of a frequently asked questions page (FAQ), addresses outstanding
questions about “shadow enhancers”, quasi‐redundant cis‐regulatory elements, and their …

A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs

G Andrey, T Montavon, B Mascrez, F Gonzalez… - Science, 2013 - science.org
Introduction During vertebrate limb development, gene members of the HoxD cluster are
transcribed in two subsequent waves, following a collinear strategy. Early on, genes located …

[HTML][HTML] A regulatory archipelago controls Hox genes transcription in digits

T Montavon, N Soshnikova, B Mascrez, E Joye… - Cell, 2011 - cell.com
The evolution of digits was an essential step in the success of tetrapods. Among the key
players, Hoxd genes are coordinately regulated in developing digits, where they help …

Evolutionary changes in promoter and enhancer activity during human corticogenesis

SK Reilly, J Yin, AE Ayoub, D Emera, J Leng, J Cotney… - Science, 2015 - science.org
Human higher cognition is attributed to the evolutionary expansion and elaboration of the
human cerebral cortex. However, the genetic mechanisms contributing to these …

Conserved non-coding elements and cis regulation: actions speak louder than words

AC Nelson, FC Wardle - Development, 2013 - journals.biologists.com
It is a truth (almost) universally acknowledged that conserved non-coding genomic
sequences function in the cis regulation of neighbouring genes. But is this a misconception …

SOX2 co-occupies distal enhancer elements with distinct POU factors in ESCs and NPCs to specify cell state

MA Lodato, CW Ng, JA Wamstad, AW Cheng… - PLoS …, 2013 - journals.plos.org
SOX2 is a master regulator of both pluripotent embryonic stem cells (ESCs) and multipotent
neural progenitor cells (NPCs); however, we currently lack a detailed understanding of how …

Convergent evolution of complex regulatory landscapes and pleiotropy at Hox loci

N Lonfat, T Montavon, F Darbellay, S Gitto, D Duboule - Science, 2014 - science.org
Hox genes are required during the morphogenesis of both vertebrate digits and external
genitals. We investigated whether transcription in such distinct contexts involves a shared …

Attenuated sensing of SHH by Ptch1 underlies evolution of bovine limbs

J Lopez-Rios, A Duchesne, D Speziale, G Andrey… - Nature, 2014 - nature.com
The large spectrum of limb morphologies reflects the wide evolutionary diversification of the
basic pentadactyl pattern in tetrapods. In even-toed ungulates (artiodactyls, including cattle) …

[HTML][HTML] Stage-specific deletion of Olig2 conveys opposing functions on differentiation and maturation of oligodendrocytes

F Mei, H Wang, S Liu, J Niu, L Wang, Y He… - Journal of …, 2013 - Soc Neuroscience
The temporal and spatial patterning involved in the specification, differentiation, and
myelination by oligodendroglia is coordinated in part by the activation and repression of …

Multiple enhancers regulate Hoxd genes and the Hotdog LncRNA during cecum budding

S Delpretti, T Montavon, M Leleu, E Joye, A Tzika… - Cell reports, 2013 - cell.com
Hox genes are required for the development of the intestinal cecum, a major organ of plant-
eating species. We have analyzed the transcriptional regulation of Hoxd genes in cecal …