The formalization of biological systems using computational modelling approaches as an
alternative to mathematical-based methods has recently received much interest because …

Computational biological models have proven to be an invaluable tool for understanding
and predicting the behaviour of many biological systems. While it may not be too …

Dynamic disease pathways are a combination of complex dynamical processes among bio-
molecules in a cell that leads to diseases. Network modeling of disease pathways considers …

We present a Python package called Modular Petri Net Assembly Toolkit (MPAT) that
empowers users to easily create large-scale, modular Petri Nets for various spatial …

With the steady advance of in-silico biological experimentation, model construction and
simulation becomes a ubiquitous tool to understand and predict the behaviour of many …