Phylogenomics and the flowering plant tree of life

C Guo, Y Luo, LM Gao, TS Yi, HT Li… - Journal of Integrative …, 2023 - Wiley Online Library
The advances accelerated by nextgeneration sequencing and longread sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …

Plastid phylogenomic insights into relationships of all flowering plant families

HT Li, Y Luo, L Gan, PF Ma, LM Gao, JB Yang, J Cai… - BMC biology, 2021 - Springer
Background Flowering plants (angiosperms) are dominant components of global terrestrial
ecosystems, but phylogenetic relationships at the familial level and above remain only …

Phylogenomic analyses highlight innovation and introgression in the continental radiations of Fagaceae across the Northern Hemisphere

BF Zhou, S Yuan, AA Crowl, YY Liang, Y Shi… - Nature …, 2022 - nature.com
Northern Hemisphere forests changed drastically in the early Eocene with the diversification
of the oak family (Fagaceae). Cooling climates over the next 20 million years fostered the …

Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms

GW Stull, XJ Qu, C Parins-Fukuchi, YY Yang, JB Yang… - Nature Plants, 2021 - nature.com
Inferring the intrinsic and extrinsic drivers of species diversification and phenotypic disparity
across the tree of life is a major challenge in evolutionary biology. In green plants, polyploidy …

Comparative and phylogenetic analyses of six Kenya Polystachya (Orchidaceae) species based on the complete chloroplast genome sequences

H Jiang, J Tian, J Yang, X Dong, Z Zhong… - BMC Plant …, 2022 - Springer
Abstract Background Polystachya Hook. is a large pantropical orchid genus (c. 240 species)
distributed in Africa, southern Asia and the Americas, with the center of diversity in Africa …

A plastid phylogenomic framework for the palm family (Arecaceae)

G Yao, YQ Zhang, C Barrett, B Xue, S Bellot, WJ Baker… - BMC biology, 2023 - Springer
Background Over the past decade, phylogenomics has greatly advanced our knowledge of
angiosperm evolution. However, phylogenomic studies of large angiosperm families with …

Spatiotemporal Evolution of the Global Species Diversity of Rhododendron

XM Xia, MQ Yang, CL Li, SX Huang… - Molecular Biology …, 2022 - academic.oup.com
Evolutionary radiation is a widely recognized mode of species diversification, but its
underlying mechanisms have not been unambiguously resolved for species-rich …

Plastid phylogenomic analyses of Fagales reveal signatures of conflict and ancient chloroplast capture

YY Yang, XJ Qu, R Zhang, GW Stull, TS Yi - Molecular Phylogenetics and …, 2021 - Elsevier
Plastid phylogenomic analyses have shed light on many recalcitrant relationships across the
angiosperm Tree of Life and continue to play an important role in plant phylogenetics …

Progress, challenge and prospect of plant plastome annotation

XJ Qu, D Zou, RY Zhang, GW Stull, TS Yi - Frontiers in Plant Science, 2023 - frontiersin.org
The plastome (plastid genome) represents an indispensable molecular data source for
studying phylogeny and evolution in plants. Although the plastome size is much smaller than …

Can plastid genome sequencing be used for species identification in Lauraceae?

ZF Liu, H Ma, XQ Ci, L Li, Y Song, B Liu… - Botanical Journal of …, 2021 - academic.oup.com
Using DNA barcoding for species identification remains challenging for many plant groups.
New sequencing approaches such as complete plastid genome sequencing may provide …