Single-cell transcriptome analysis in plants: advances and challenges
The rapid and enthusiastic adoption of single-cell RNA sequencing (scRNA-seq) has
demonstrated that this technology is far more than just another way to perform transcriptome …
demonstrated that this technology is far more than just another way to perform transcriptome …
Single‐cell analysis using droplet microfluidics
Droplet microfluidics has revolutionized the study of single cells. The ability to
compartmentalize cells within picoliter droplets in microfluidic devices has opened up a wide …
compartmentalize cells within picoliter droplets in microfluidic devices has opened up a wide …
[HTML][HTML] Chromatin potential identified by shared single-cell profiling of RNA and chromatin
Cell differentiation and function are regulated across multiple layers of gene regulation,
including modulation of gene expression by changes in chromatin accessibility. However …
including modulation of gene expression by changes in chromatin accessibility. However …
The spatial and cell-type distribution of SARS-CoV-2 receptor ACE2 in the human and mouse brains
By engaging angiotensin-converting enzyme 2 (ACE2 or Ace2), the novel pathogenic
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) invades host cells and …
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) invades host cells and …
A comparison of automatic cell identification methods for single-cell RNA sequencing data
Background Single-cell transcriptomics is rapidly advancing our understanding of the
cellular composition of complex tissues and organisms. A major limitation in most analysis …
cellular composition of complex tissues and organisms. A major limitation in most analysis …
[HTML][HTML] Single-cell profiles of retinal ganglion cells differing in resilience to injury reveal neuroprotective genes
Neuronal types in the central nervous system differ dramatically in their resilience to injury or
other insults. Here we studied the selective resilience of mouse retinal ganglion cells …
other insults. Here we studied the selective resilience of mouse retinal ganglion cells …
Assessment of computational methods for the analysis of single-cell ATAC-seq data
Background Recent innovations in single-cell Assay for Transposase Accessible Chromatin
using sequencing (scATAC-seq) enable profiling of the epigenetic landscape of thousands …
using sequencing (scATAC-seq) enable profiling of the epigenetic landscape of thousands …
Efficient and precise single-cell reference atlas mapping with Symphony
Recent advances in single-cell technologies and integration algorithms make it possible to
construct comprehensive reference atlases encompassing many donors, studies, disease …
construct comprehensive reference atlases encompassing many donors, studies, disease …
Hybridization-based in situ sequencing (HybISS) for spatially resolved transcriptomics in human and mouse brain tissue
D Gyllborg, CM Langseth, X Qian, E Choi… - Nucleic acids …, 2020 - academic.oup.com
Visualization of the transcriptome in situ has proven to be a valuable tool in exploring single-
cell RNA-sequencing data, providing an additional spatial dimension to investigate …
cell RNA-sequencing data, providing an additional spatial dimension to investigate …
Single-cell analyses of aging, inflammation and senescence
Single-cell gene expression (transcriptomics) data are becoming robust and abundant, and
are increasingly used to track organisms along their life-course. This allows investigation …
are increasingly used to track organisms along their life-course. This allows investigation …