A Transparent Window into Biology: A Primer on Caenorhabditis elegans

AK Corsi, B Wightman, M Chalfie - Genetics, 2015 - academic.oup.com
A little over 50 years ago, Sydney Brenner had the foresight to develop the nematode (round
worm) Caenorhabditis elegans as a genetic model for understanding questions of …

Effects, tolerance mechanisms and management of salt stress in grain legumes

M Farooq, N Gogoi, M Hussain, S Barthakur… - Plant Physiology and …, 2017 - Elsevier
Salt stress is an ever-present threat to crop yields, especially in countries with irrigated
agriculture. Efforts to improve salt tolerance in crop plants are vital for sustainable crop …

Genome sequencing reveals agronomically important loci in rice using MutMap

A Abe, S Kosugi, K Yoshida, S Natsume, H Takagi… - Nature …, 2012 - nature.com
The majority of agronomic traits are controlled by multiple genes that cause minor
phenotypic effects, making the identification of these genes difficult. Here we introduce …

MMAPPR: mutation mapping analysis pipeline for pooled RNA-seq

JT Hill, BL Demarest, BW Bisgrove, B Gorsi… - Genome …, 2013 - genome.cshlp.org
Forward genetic screens in model organisms are vital for identifying novel genes essential
for developmental or disease processes. One drawback of these screens is the labor …

Using next-generation sequencing to isolate mutant genes from forward genetic screens

K Schneeberger - Nature Reviews Genetics, 2014 - nature.com
The long-lasting success of forward genetic screens relies on the simple molecular basis of
the characterized phenotypes, which are typically caused by mutations in single genes …

CloudMap: a cloud-based pipeline for analysis of mutant genome sequences

G Minevich, DS Park, D Blankenberg, RJ Poole… - Genetics, 2012 - academic.oup.com
Whole genome sequencing (WGS) allows researchers to pinpoint genetic differences
between individuals and significantly shortcuts the costly and time-consuming part of …

Next‐generation mapping of Arabidopsis genes

RS Austin, D Vidaurre, G Stamatiou, R Breit… - The Plant …, 2011 - Wiley Online Library
Next‐generation genomic sequencing technologies have made it possible to directly map
mutations responsible for phenotypes of interest via direct sequencing. However, most …

Genome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar, an outgroup for the teleost genome duplication

A Amores, J Catchen, A Ferrara, Q Fontenot… - Genetics, 2011 - academic.oup.com
Genomic resources for hundreds of species of evolutionary, agricultural, economic, and
medical importance are unavailable due to the expense of well-assembled genome …

C. elegans Mutant Identification with a One-Step Whole-Genome-Sequencing and SNP Mapping Strategy

M Doitsidou, RJ Poole, S Sarin, H Bigelow, O Hobert - PloS one, 2010 - journals.plos.org
Whole-genome sequencing (WGS) is becoming a fast and cost-effective method to pinpoint
molecular lesions in mutagenized genetic model systems, such as Caenorhabditis elegans …

Grain legumes and fear of salt stress: Focus on mechanisms and management strategies

M Nadeem, J Li, M Yahya, M Wang, A Ali… - International Journal of …, 2019 - mdpi.com
Salinity is an ever-present major constraint and a major threat to legume crops, particularly
in areas with irrigated agriculture. Legumes demonstrate high sensitivity, especially during …