Using machine learning approaches for multi-omics data analysis: A review

PS Reel, S Reel, E Pearson, E Trucco… - Biotechnology advances, 2021 - Elsevier
With the development of modern high-throughput omic measurement platforms, it has
become essential for biomedical studies to undertake an integrative (combined) approach to …

Machine learning algorithms reveal potential miRNAs biomarkers in gastric cancer

H Azari, E Nazari, R Mohit, A Asadnia, M Maftooh… - Scientific Reports, 2023 - nature.com
Gastric cancer is the high mortality rate cancers globally, and the current survival rate is 30%
even with the use of combination therapies. Recently, mounting evidence indicates the …

[HTML][HTML] The need to prioritize model-updating processes in clinical artificial intelligence (AI) models: protocol for a scoping review

AU Otokiti, MM Ozoude, KS Williams… - JMIR Research …, 2023 - researchprotocols.org
Background: With an increase in the number of artificial intelligence (AI) and machine
learning (ML) algorithms available for clinical settings, appropriate model updating and …

Diagnosis of breast cancer molecular subtypes using machine learning models on unimodal and multimodal datasets

S Rani, T Ahmad, S Masood, C Saxena - Neural Computing and …, 2023 - Springer
Breast cancer is a significant global health concern, with millions of cases and deaths each
year. Accurate diagnosis is critical for timely treatment and medication. Machine learning …

SyntheVAEiser: augmenting traditional machine learning methods with VAE-based gene expression sample generation for improved cancer subtype predictions

B Karlberg, R Kirchgaessner, J Lee, M Peterkort… - Genome Biology, 2024 - Springer
The accuracy of machine learning methods is often limited by the amount of training data
that is available. We proposed to improve machine learning training regimes by augmenting …

The multiomics revolution in the era of deep learning: Allies or enemies?

J Labory, S Bottini - Artificial Intelligence for Medicine, 2024 - Elsevier
The advent of high-throughput omics technologies has led to the generation of a large
volume of omics data to be analyzed. Individual analyses of omics layers provide only a one …

[PDF][PDF] Reproducibility, Transparency and Evaluation of Machine Learning in Health Applications.

J Wojtusiak - HEALTHINF, 2021 - scitepress.org
This paper argues for the importance of detailed reporting of results of machine learning
modeling applied in medical, healthcare and health applications. It describes ten criteria …

Application of deep learning-based fuzzy systems to analyze the overall risk of mortality in glioblastoma multiforme

CH Yang, TH Cheung, LY Chuang - Machine Learning: Science …, 2024 - iopscience.iop.org
Glioblastoma multiforme (GBM) is the most aggressive brain cancer in adults, with 3.2–3.4
cases per 100 thousand. In the US, brain cancer does not rank in the top 10 causes of death …

binomialRF: interpretable combinatoric efficiency of random forests to identify biomarker interactions

S Rachid Zaim, C Kenost, J Berghout, W Chiu… - BMC …, 2020 - Springer
Background In this era of data science-driven bioinformatics, machine learning research has
focused on feature selection as users want more interpretation and post-hoc analyses for …

Construction of a Diagnostic Model for Distinguishing Benign or Malignant Bone Cancer by Mining miRNA Expression Data

Y Zhang, J Hu, T Li, S Hao, X Wu - Biochemical Genetics, 2023 - Springer
Bone tumor is a kind of rare cancer, the location of which is mainly in bone tissue as well as
cartilage tissue. Bone tumor is mainly classified into benign and malignant types. The …