[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …
identification of whole communities within a targeted group) is revolutionizing the field of …
[HTML][HTML] The future of biotic indices in the ecogenomic era: Integrating (e) DNA metabarcoding in biological assessment of aquatic ecosystems
The bioassessment of aquatic ecosystems is currently based on various biotic indices that
use the occurrence and/or abundance of selected taxonomic groups to define ecological …
use the occurrence and/or abundance of selected taxonomic groups to define ecological …
[HTML][HTML] Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring
M Sagova-Mareckova, J Boenigk, A Bouchez… - Water research, 2021 - Elsevier
Bioindication has become an indispensable part of water quality monitoring in most
countries of the world, with the presence and abundance of bioindicator taxa, mostly …
countries of the world, with the presence and abundance of bioindicator taxa, mostly …
Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap
T Cordier, L Alonso‐Sáez… - Molecular …, 2021 - Wiley Online Library
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
Embracing environmental genomics and machine learning for routine biomonitoring
Genomics is fast becoming a routine tool in medical diagnostics and cutting-edge
biotechnologies. Yet, its use for environmental biomonitoring is still considered a futuristic …
biotechnologies. Yet, its use for environmental biomonitoring is still considered a futuristic …
Predicting the ecological quality status of marine environments from eDNA metabarcoding data using supervised machine learning
Monitoring biodiversity is essential to assess the impacts of increasing anthropogenic
activities in marine environments. Traditionally, marine biomonitoring involves the sorting …
activities in marine environments. Traditionally, marine biomonitoring involves the sorting …
Supervised machine learning outperforms taxonomy‐based environmental DNA metabarcoding applied to biomonitoring
T Cordier, D Forster, Y Dufresne… - Molecular ecology …, 2018 - Wiley Online Library
Biodiversity monitoring is the standard for environmental impact assessment of
anthropogenic activities. Several recent studies showed that high‐throughput amplicon …
anthropogenic activities. Several recent studies showed that high‐throughput amplicon …
Life in a drop: Sampling environmental DNA for marine fishery management and ecosystem monitoring
Science-based management of marine fisheries and effective ecosystem monitoring both
require the analysis of large amounts of often complex and difficult to collect information …
require the analysis of large amounts of often complex and difficult to collect information …
Advantages and limitations of environmental DNA/RNA tools for marine biosecurity: management and surveillance of non-indigenous species
To enable successful management of marine bioinvasions, timely and robust scientific
advice is required. This knowledge should inform managers and stakeholders on the …
advice is required. This knowledge should inform managers and stakeholders on the …
Development and preliminary validation of a multi-trophic metabarcoding biotic index for monitoring benthic organic enrichment
Sea-based fish farms are associated with strong, benthic enrichment gradients and routine
monitoring is usually required by regulation. This has traditionally been based on benthic …
monitoring is usually required by regulation. This has traditionally been based on benthic …