Evolutionary genomics of defense systems in archaea and bacteria

EV Koonin, KS Makarova, YI Wolf - Annual review of …, 2017 - annualreviews.org
Evolution of bacteria and archaea involves an incessant arms race against an enormous
diversity of genetic parasites. Accordingly, a substantial fraction of the genes in most …

Comparative genomics of defense systems in archaea and bacteria

KS Makarova, YI Wolf, EV Koonin - Nucleic acids research, 2013 - academic.oup.com
Our knowledge of prokaryotic defense systems has vastly expanded as the result of
comparative genomic analysis, followed by experimental validation. This expansion is both …

The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts

PH Oliveira, M Touchon, EPC Rocha - Nucleic acids research, 2014 - academic.oup.com
The roles of restriction-modification (RM) systems in providing immunity against horizontal
gene transfer (HGT) and in stabilizing mobile genetic elements (MGEs) have been much …

To be or not to be: regulation of restriction–modification systems and other toxin–antitoxin systems

I Mruk, I Kobayashi - Nucleic acids research, 2014 - academic.oup.com
One of the simplest classes of genes involved in programmed death is that containing the
toxin–antitoxin (TA) systems of prokaryotes. These systems are composed of an intracellular …

Biosynthesis and function of modified bases in bacteria and their viruses

P Weigele, EA Raleigh - Chemical reviews, 2016 - ACS Publications
Naturally occurring modification of the canonical A, G, C, and T bases can be found in the
DNA of cellular organisms and viruses from all domains of life. Bacterial viruses …

Role of restriction-modification systems in prokaryotic evolution and ecology

AS Ershova, IS Rusinov, SA Spirin, AS Karyagina… - Biochemistry …, 2015 - Springer
Restriction–modification (RM) systems are able to methylate or cleave DNA depending on
methylation status of their recognition site. It allows them to protect bacterial cells from …

Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles

T Nandi, MTG Holden, X Didelot, K Mehershahi… - Genome …, 2015 - genome.cshlp.org
Burkholderia pseudomallei (Bp) is the causative agent of the infectious disease melioidosis.
To investigate population diversity, recombination, and horizontal gene transfer in closely …

Methylation-dependent DNA discrimination in natural transformation of Campylobacter jejuni

JM Beauchamp, RM Leveque… - Proceedings of the …, 2017 - National Acad Sciences
Campylobacter jejuni, a leading cause of bacterial gastroenteritis, is naturally competent.
Like many competent organisms, C. jejuni restricts the DNA that can be used for …

Genome-derived insights into the biology of the hepatotoxic bloom-forming cyanobacterium Anabaena sp. strain 90

H Wang, K Sivonen, L Rouhiainen, DP Fewer, C Lyra… - BMC genomics, 2012 - Springer
Background Cyanobacteria can form massive toxic blooms in fresh and brackish bodies of
water and are frequently responsible for the poisoning of animals and pose a health risk for …

[HTML][HTML] N6-methyladenine and epigenetic immunity of Deinococcus radiodurans

S Joshi, AK Ujaoney, P Ghosh, DD Deobagkar… - Research in …, 2021 - Elsevier
DNA methylation is ubiquitously found in all three domains of life. This epigenetic
modification on adenine or cytosine residues serves to regulate gene expression or to …