Evolutionary genomics of defense systems in archaea and bacteria
EV Koonin, KS Makarova, YI Wolf - Annual review of …, 2017 - annualreviews.org
Evolution of bacteria and archaea involves an incessant arms race against an enormous
diversity of genetic parasites. Accordingly, a substantial fraction of the genes in most …
diversity of genetic parasites. Accordingly, a substantial fraction of the genes in most …
Comparative genomics of defense systems in archaea and bacteria
KS Makarova, YI Wolf, EV Koonin - Nucleic acids research, 2013 - academic.oup.com
Our knowledge of prokaryotic defense systems has vastly expanded as the result of
comparative genomic analysis, followed by experimental validation. This expansion is both …
comparative genomic analysis, followed by experimental validation. This expansion is both …
The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts
The roles of restriction-modification (RM) systems in providing immunity against horizontal
gene transfer (HGT) and in stabilizing mobile genetic elements (MGEs) have been much …
gene transfer (HGT) and in stabilizing mobile genetic elements (MGEs) have been much …
To be or not to be: regulation of restriction–modification systems and other toxin–antitoxin systems
I Mruk, I Kobayashi - Nucleic acids research, 2014 - academic.oup.com
One of the simplest classes of genes involved in programmed death is that containing the
toxin–antitoxin (TA) systems of prokaryotes. These systems are composed of an intracellular …
toxin–antitoxin (TA) systems of prokaryotes. These systems are composed of an intracellular …
Biosynthesis and function of modified bases in bacteria and their viruses
P Weigele, EA Raleigh - Chemical reviews, 2016 - ACS Publications
Naturally occurring modification of the canonical A, G, C, and T bases can be found in the
DNA of cellular organisms and viruses from all domains of life. Bacterial viruses …
DNA of cellular organisms and viruses from all domains of life. Bacterial viruses …
Role of restriction-modification systems in prokaryotic evolution and ecology
AS Ershova, IS Rusinov, SA Spirin, AS Karyagina… - Biochemistry …, 2015 - Springer
Restriction–modification (RM) systems are able to methylate or cleave DNA depending on
methylation status of their recognition site. It allows them to protect bacterial cells from …
methylation status of their recognition site. It allows them to protect bacterial cells from …
Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles
Burkholderia pseudomallei (Bp) is the causative agent of the infectious disease melioidosis.
To investigate population diversity, recombination, and horizontal gene transfer in closely …
To investigate population diversity, recombination, and horizontal gene transfer in closely …
Methylation-dependent DNA discrimination in natural transformation of Campylobacter jejuni
JM Beauchamp, RM Leveque… - Proceedings of the …, 2017 - National Acad Sciences
Campylobacter jejuni, a leading cause of bacterial gastroenteritis, is naturally competent.
Like many competent organisms, C. jejuni restricts the DNA that can be used for …
Like many competent organisms, C. jejuni restricts the DNA that can be used for …
Genome-derived insights into the biology of the hepatotoxic bloom-forming cyanobacterium Anabaena sp. strain 90
Background Cyanobacteria can form massive toxic blooms in fresh and brackish bodies of
water and are frequently responsible for the poisoning of animals and pose a health risk for …
water and are frequently responsible for the poisoning of animals and pose a health risk for …
[HTML][HTML] N6-methyladenine and epigenetic immunity of Deinococcus radiodurans
DNA methylation is ubiquitously found in all three domains of life. This epigenetic
modification on adenine or cytosine residues serves to regulate gene expression or to …
modification on adenine or cytosine residues serves to regulate gene expression or to …