Mass spectrometry methods for measuring protein stability
DD Vallejo, C Rojas Ramírez, KF Parson, Y Han… - Chemical …, 2022 - ACS Publications
Mass spectrometry is a central technology in the life sciences, providing our most
comprehensive account of the molecular inventory of the cell. In parallel with developments …
comprehensive account of the molecular inventory of the cell. In parallel with developments …
Is protein folding a thermodynamically unfavorable, active, energy-dependent process?
I Sorokina, AR Mushegian, EV Koonin - International journal of molecular …, 2022 - mdpi.com
The prevailing current view of protein folding is the thermodynamic hypothesis, under which
the native folded conformation of a protein corresponds to the global minimum of Gibbs free …
the native folded conformation of a protein corresponds to the global minimum of Gibbs free …
A combinatorially complete epistatic fitness landscape in an enzyme active site
Protein engineering often targets binding pockets or active sites which are enriched in
epistasis—nonadditive interactions between amino acid substitutions—and where the …
epistasis—nonadditive interactions between amino acid substitutions—and where the …
Homologous Pairs of Low and High Temperature Originating Proteins Spanning the Known Prokaryotic Universe
Stability of proteins at high temperature has been a topic of interest for many years, as this
attribute is favourable for applications ranging from therapeutics to industrial chemical …
attribute is favourable for applications ranging from therapeutics to industrial chemical …
[HTML][HTML] Protocol for performing and optimizing differential scanning fluorimetry experiments
T Wu, M Hornsby, L Zhu, CY Joshua, KM Shokat… - STAR protocols, 2023 - Elsevier
Differential scanning fluorimetry (DSF) is a widely used technique for determining the
apparent melting temperature (Tma) of a purified protein. Here, we present a protocol for …
apparent melting temperature (Tma) of a purified protein. Here, we present a protocol for …
Functional and in silico analysis of ATP8A2 and other P4-ATPase variants associated with human genetic diseases
E Matsell, JP Andersen… - Disease Models & …, 2024 - journals.biologists.com
ABSTRACT P4-ATPases flip lipids from the exoplasmic to cytoplasmic leaflet of cell
membranes, a property crucial for many biological processes. Mutations in P4-ATPases are …
membranes, a property crucial for many biological processes. Mutations in P4-ATPases are …
High throughput and quantitative enzymology in the genomic era
Accurate predictions from models based on physical principles are the ultimate metric of our
biophysical understanding. Although there has been stunning progress toward structure …
biophysical understanding. Although there has been stunning progress toward structure …
Fluorescence-based protein stability monitoring—a review
Proteins are large biomolecules with a specific structure that is composed of one or more
long amino acid chains. Correct protein structures are directly linked to their correct function …
long amino acid chains. Correct protein structures are directly linked to their correct function …
[HTML][HTML] Conformationally responsive dyes enable protein-adaptive differential scanning fluorimetry
Flexible in vitro methods alter the course of biological discoveries. Differential Scanning
Fluorimetry (DSF) is a particularly versatile technique which reports protein thermal …
Fluorimetry (DSF) is a particularly versatile technique which reports protein thermal …
Quantitation of autoinhibitory defects in pathogenic SHP2 mutants by differential scanning fluorimetry
A Serbina, AC Bishop - Analytical Biochemistry, 2023 - Elsevier
Abstract Src-homology-2-domain-containing protein tyrosine phosphatase-2 (SHP2) is a
signaling enzyme whose activity is governed by an equilibrium between autoinhibited and …
signaling enzyme whose activity is governed by an equilibrium between autoinhibited and …