The emerging role of mass spectrometry-based proteomics in drug discovery

F Meissner, J Geddes-McAlister, M Mann… - Nature Reviews Drug …, 2022 - nature.com
Proteins are the main targets of most drugs; however, system-wide methods to monitor
protein activity and function are still underused in drug discovery. Novel biochemical …

Cancer proteogenomics: current impact and future prospects

DR Mani, K Krug, B Zhang, S Satpathy… - Nature Reviews …, 2022 - nature.com
Genomic analyses in cancer have been enormously impactful, leading to the identification of
driver mutations and development of targeted therapies. But the functions of the vast majority …

Psychedelics promote plasticity by directly binding to BDNF receptor TrkB

R Moliner, M Girych, CA Brunello, V Kovaleva… - Nature …, 2023 - nature.com
Psychedelics produce fast and persistent antidepressant effects and induce neuroplasticity
resembling the effects of clinically approved antidepressants. We recently reported that …

Profiling the human intestinal environment under physiological conditions

D Shalon, RN Culver, JA Grembi, J Folz, PV Treit, H Shi… - Nature, 2023 - nature.com
The spatiotemporal structure of the human microbiome,, proteome and metabolome, reflects
and determines regional intestinal physiology and may have implications for disease. Yet …

The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences

Y Perez-Riverol, J Bai, C Bandla… - Nucleic acids …, 2022 - academic.oup.com
Abstract The PRoteomics IDEntifications (PRIDE) database (https://www. ebi. ac. uk/pride/) is
the world's largest data repository of mass spectrometry-based proteomics data. PRIDE is …

Global detection of human variants and isoforms by deep proteome sequencing

P Sinitcyn, AL Richards, RJ Weatheritt… - Nature …, 2023 - nature.com
An average shotgun proteomics experiment detects approximately 10,000 human proteins
from a single sample. However, individual proteins are typically identified by peptide …

Tissue extracellular matrix hydrogels as alternatives to Matrigel for culturing gastrointestinal organoids

S Kim, S Min, YS Choi, SH Jo, JH Jung, K Han… - Nature …, 2022 - nature.com
Matrigel, a mouse tumor extracellular matrix protein mixture, is an indispensable component
of most organoid tissue culture. However, it has limited the utility of organoids for drug …

The EDS1–PAD4–ADR1 node mediates Arabidopsis pattern-triggered immunity

RN Pruitt, F Locci, F Wanke, L Zhang, SC Saile, A Joe… - Nature, 2021 - nature.com
Plants deploy cell-surface and intracellular leucine rich-repeat domain (LRR) immune
receptors to detect pathogens. LRR receptor kinases and LRR receptor proteins at the …

Metabolic modulation of tumours with engineered bacteria for immunotherapy

FP Canale, C Basso, G Antonini, M Perotti, N Li… - Nature, 2021 - nature.com
The availability of l-arginine in tumours is a key determinant of an efficient anti-tumour T cell
response,,–. Consequently, increases of typically low l-arginine concentrations within the …

A clinically applicable integrative molecular classification of meningiomas

F Nassiri, J Liu, V Patil, Y Mamatjan, JZ Wang… - Nature, 2021 - nature.com
Meningiomas are the most common primary intracranial tumour in adults. Patients with
symptoms are generally treated with surgery as there are no effective medical therapies. The …