Nonlinear control of transcription through enhancer–promoter interactions

J Zuin, G Roth, Y Zhan, J Cramard, J Redolfi… - Nature, 2022 - nature.com
Chromosome structure in mammals is thought to regulate transcription by modulating three-
dimensional interactions between enhancers and promoters, notably through CTCF …

Fate mapping of human glioblastoma reveals an invariant stem cell hierarchy

X Lan, DJ Jörg, FMG Cavalli, LM Richards, LV Nguyen… - Nature, 2017 - nature.com
Human glioblastomas harbour a subpopulation of glioblastoma stem cells that drive
tumorigenesis. However, the origin of intratumoural functional heterogeneity between …

Single-molecule DNA amplification and analysis using microfluidics

C Zhang, D Xing - Chemical reviews, 2010 - ACS Publications
The broad availability of amplified DNA molecules enabled the development of many
powerful applications in molecular biology techniques. Currently, a variety of DNA …

Identification and characterization of essential genes in the human genome

T Wang, K Birsoy, NW Hughes, KM Krupczak, Y Post… - Science, 2015 - science.org
Large-scale genetic analysis of lethal phenotypes has elucidated the molecular
underpinnings of many biological processes. Using the bacterial clustered regularly …

Variable clonal repopulation dynamics influence chemotherapy response in colorectal cancer

A Kreso, CA O'Brien, P Van Galen, OI Gan, F Notta… - Science, 2013 - science.org
Intratumoral heterogeneity arises through the evolution of genetically diverse subclones
during tumor progression. However, it remains unknown whether cells within single genetic …

Cancer gene discovery: exploiting insertional mutagenesis

M Ranzani, S Annunziato, DJ Adams, E Montini - Molecular cancer research, 2013 - AACR
Insertional mutagenesis has been used as a functional forward genetics screen for the
identification of novel genes involved in the pathogenesis of human cancers. Different …

In vivo CRISPR screening in CD8 T cells with AAV–Sleeping Beauty hybrid vectors identifies membrane targets for improving immunotherapy for glioblastoma

L Ye, JJ Park, MB Dong, Q Yang, RD Chow… - Nature …, 2019 - nature.com
Targeting membrane proteins could improve the efficacy of T cell–based immunotherapies.
To facilitate the identification of T cell targets, we developed a hybrid genetic screening …

Targeted sequencing by proximity ligation for comprehensive variant detection and local haplotyping

PJP De Vree, E De Wit, M Yilmaz… - Nature …, 2014 - nature.com
Despite developments in targeted gene sequencing and whole-genome analysis
techniques, the robust detection of all genetic variation, including structural variants, in and …

The deubiquitinase USP9X suppresses pancreatic ductal adenocarcinoma

PA Pérez-Mancera, AG Rust, L Van Der Weyden… - Nature, 2012 - nature.com
Pancreatic ductal adenocarcinoma (PDA) remains a lethal malignancy despite much
progress concerning its molecular characterization. PDA tumours harbour four signature …

The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries

L Barquist, M Mayho, C Cummins, AK Cain… - …, 2016 - academic.oup.com
Transposon insertion sequencing is a high-throughput technique for assaying large libraries
of otherwise isogenic transposon mutants providing insight into gene essentiality, gene …