Regulation and function of the mammalian tricarboxylic acid cycle

PK Arnold, LWS Finley - Journal of Biological Chemistry, 2023 - ASBMB
The tricarboxylic acid (TCA) cycle, otherwise known as the Krebs cycle, is a central
metabolic pathway that performs the essential function of oxidizing nutrients to support …

The interplay of epigenetic marks during stem cell differentiation and development

Y Atlasi, HG Stunnenberg - Nature Reviews Genetics, 2017 - nature.com
Chromatin, the template for epigenetic regulation, is a highly dynamic entity that is constantly
reshaped during early development and differentiation. Epigenetic modification of chromatin …

Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation

N Kubo, H Ishii, X Xiong, S Bianco… - Nature structural & …, 2021 - nature.com
The CCCTC-binding factor (CTCF) works together with the cohesin complex to drive the
formation of chromatin loops and topologically associating domains, but its role in gene …

Dynamic stem cell states: naive to primed pluripotency in rodents and humans

L Weinberger, M Ayyash, N Novershtern… - … reviews Molecular cell …, 2016 - nature.com
The molecular mechanisms and signalling pathways that regulate the in vitro preservation of
distinct pluripotent stem cell configurations, and their induction in somatic cells by direct …

Intracellular α-ketoglutarate maintains the pluripotency of embryonic stem cells

BW Carey, LWS Finley, JR Cross, CD Allis… - Nature, 2015 - nature.com
The role of cellular metabolism in regulating cell proliferation and differentiation remains
poorly understood. For example, most mammalian cells cannot proliferate without …

Resetting transcription factor control circuitry toward ground-state pluripotency in human

Y Takashima, G Guo, R Loos, J Nichols, G Ficz… - Cell, 2014 - cell.com
Current human pluripotent stem cells lack the transcription factor circuitry that governs the
ground state of mouse embryonic stem cells (ESC). Here, we report that short-term …

Formative pluripotency: the executive phase in a developmental continuum

A Smith - Development, 2017 - journals.biologists.com
The regulative capability of single cells to give rise to all primary embryonic lineages is
termed pluripotency. Observations of fluctuating gene expression and phenotypic …

[HTML][HTML] Reversing DNA methylation: mechanisms, genomics, and biological functions

H Wu, Y Zhang - Cell, 2014 - cell.com
Methylation of cytosines in the mammalian genome represents a key epigenetic modification
and is dynamically regulated during development. Compelling evidence now suggests that …

Decoding the function of bivalent chromatin in development and cancer

D Kumar, S Cinghu, AJ Oldfield, P Yang… - Genome …, 2021 - genome.cshlp.org
Bivalent chromatin is characterized by the simultaneous presence of H3K4me3 and
H3K27me3, histone modifications generally associated with transcriptionally active and …

Hallmarks of pluripotency

A De Los Angeles, F Ferrari, R Xi, Y Fujiwara… - Nature, 2015 - nature.com
Stem cells self-renew and generate specialized progeny through differentiation, but vary in
the range of cells and tissues they generate, a property called developmental potency …