Doubling down on genomes: polyploidy and crop plants

S Renny‐Byfield, JF Wendel - American journal of botany, 2014 - Wiley Online Library
Polyploidy, or whole genome multiplication, is ubiquitous among angiosperms. Many crop
species are relatively recent allopolyploids, resulting from interspecific hybridization and …

Evolution of the Cotton Genus, Gossypium, and Its Domestication in the Americas

CR Viot, JF Wendel - Critical Reviews in Plant Sciences, 2023 - Taylor & Francis
Gossypium, the cotton genus, includes∼ 50 species distributed in tropical and sub-tropical
regions of all continents except Europe. Here we provide a synopsis of the evolutionary …

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

B Chalhoub, F Denoeud, S Liu, IAP Parkin, H Tang… - science, 2014 - science.org
Oilseed rape (Brassica napus L.) was formed~ 7500 years ago by hybridization between B.
rapa and B. oleracea, followed by chromosome doubling, a process known as …

CottonGen: the community database for cotton genomics, genetics, and breeding research

J Yu, S Jung, CH Cheng, T Lee, P Zheng, K Buble… - Plants, 2021 - mdpi.com
Over the last eight years, the volume of whole genome, gene expression, SNP genotyping,
and phenotype data generated by the cotton research community has exponentially …

Gossypium barbadense genome sequence provides insight into the evolution of extra-long staple fiber and specialized metabolites

X Liu, B Zhao, HJ Zheng, Y Hu, G Lu, CQ Yang… - Scientific reports, 2015 - nature.com
Of the two cultivated species of allopolyploid cotton, Gossypium barbadense produces extra-
long fibers for the production of superior textiles. We sequenced its genome (AD) 2 and …

The genome sequence of Sea-Island cotton (Gossypium barbadense) provides insights into the allopolyploidization and development of superior spinnable fibres

D Yuan, Z Tang, M Wang, W Gao, L Tu, X Jin, L Chen… - Scientific reports, 2015 - nature.com
Gossypium hirsutum contributes the most production of cotton fibre, but G. barbadense is
valued for its better comprehensive resistance and superior fibre properties. However, the …

CottonGen: a genomics, genetics and breeding database for cotton research

J Yu, S Jung, CH Cheng, SP Ficklin, T Lee… - Nucleic acids …, 2014 - academic.oup.com
Abstract CottonGen (http://www. cottongen. org) is a curated and integrated web-based
relational database providing access to publicly available genomic, genetic and breeding …

Evolutionary origins and dynamics of octoploid strawberry subgenomes revealed by dense targeted capture linkage maps

JA Tennessen, R Govindarajulu… - Genome biology and …, 2014 - academic.oup.com
Whole-genome duplications are radical evolutionary events that have driven speciation and
adaptation in many taxa. Higher-order polyploids have complex histories often including …

Identification of Gossypium hirsutum long non-coding RNAs (lncRNAs) under salt stress

F Deng, X Zhang, W Wang, R Yuan, F Shen - BMC plant biology, 2018 - Springer
Abstract Background Long non-coding RNAs (lncRNAs) represent a class of riboregulators
that either directly act in long form or are processed into shorter microRNAs (miRNAs) and …

Genome synteny has been conserved among the octoploid progenitors of cultivated strawberry over millions of years of evolution

MA Hardigan, MJ Feldmann, A Lorant, KA Bird… - Frontiers in plant …, 2020 - frontiersin.org
Allo-octoploid cultivated strawberry (Fragaria× ananassa) originated through a combination
of polyploid and homoploid hybridization, domestication of an interspecific hybrid lineage …