Genome sequencing and population genomics in non-model organisms
H Ellegren - Trends in ecology & evolution, 2014 - cell.com
High-throughput sequencing technologies are revolutionizing the life sciences. The past 12
months have seen a burst of genome sequences from non-model organisms, in each case …
months have seen a burst of genome sequences from non-model organisms, in each case …
A field guide to whole‐genome sequencing, assembly and annotation
Genome sequencing projects were long confined to biomedical model organisms and
required the concerted effort of large consortia. Rapid progress in high‐throughput …
required the concerted effort of large consortia. Rapid progress in high‐throughput …
How many species of mammals are there?
Accurate taxonomy is central to the study of biological diversity, as it provides the needed
evolutionary framework for taxon sampling and interpreting results. While the number of …
evolutionary framework for taxon sampling and interpreting results. While the number of …
Robust and scalable inference of population history from hundreds of unphased whole genomes
J Terhorst, JA Kamm, YS Song - Nature genetics, 2017 - nature.com
It has recently been demonstrated that inference methods based on genealogical processes
with recombination can uncover past population history in unprecedented detail. However …
with recombination can uncover past population history in unprecedented detail. However …
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach
We present an in silico approach for the reconstruction of complete mitochondrial genomes
of non-model organisms directly from next-generation sequencing (NGS) data …
of non-model organisms directly from next-generation sequencing (NGS) data …
mapDamage2. 0: fast approximate Bayesian estimates of ancient DNA damage parameters
Abstract Motivation: Ancient DNA (aDNA) molecules in fossilized bones and teeth,
coprolites, sediments, mummified specimens and museum collections represent fantastic …
coprolites, sediments, mummified specimens and museum collections represent fantastic …
Comparative genomics provides insights into the aquatic adaptations of mammals
The ancestors of marine mammals once roamed the land and independently committed to
an aquatic lifestyle. These macroevolutionary transitions have intrigued scientists for …
an aquatic lifestyle. These macroevolutionary transitions have intrigued scientists for …
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
The rich fossil record of equids has made them a model for evolutionary processes. Here we
present a 1.12-times coverage draft genome from a horse bone recovered from permafrost …
present a 1.12-times coverage draft genome from a horse bone recovered from permafrost …
Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX
M Schubert, L Ermini, CD Sarkissian, H Jónsson… - Nature protocols, 2014 - nature.com
Next-generation sequencing technologies have revolutionized the field of paleogenomics,
allowing the reconstruction of complete ancient genomes and their comparison with modern …
allowing the reconstruction of complete ancient genomes and their comparison with modern …
Polar regions
JN Larsen, OA Anisimov, A Constable… - Climate change 2014 …, 2015 - elibrary.ru
Several recent climate impact assessments on polar regions have been undertaken,
including the synthesis report on Snow, Water, Ice and Permafrost in the Arctic (AMAP …
including the synthesis report on Snow, Water, Ice and Permafrost in the Arctic (AMAP …