[HTML][HTML] SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
Background Qualitative frameworks, especially those based on the logical discrete
formalism, are increasingly used to model regulatory and signalling networks. A major …
formalism, are increasingly used to model regulatory and signalling networks. A major …
Behavioral dynamics of bacteriophage gene regulatory networks
We present hybrid system-based gene regulatory network models for lambda, HK022, and
Mu bacteriophages together with dynamics analysis of the modeled networks. The proposed …
Mu bacteriophages together with dynamics analysis of the modeled networks. The proposed …
[HTML][HTML] Dynamics of gene regulatory networks and their dependence on network topology and quantitative parameters – the case of phage λ
Background Gene regulatory networks can be modelled in various ways depending on the
level of detail required and biological questions addressed. One of the earliest formalisms …
level of detail required and biological questions addressed. One of the earliest formalisms …
Modeling and analysis of qualitative behavior of gene regulatory networks
We describe a hybrid system based framework for modeling gene regulation and other
biomolecular networks and a method for analysis of the dynamic behavior of such models. A …
biomolecular networks and a method for analysis of the dynamic behavior of such models. A …
[PDF][PDF] Hybrid Gene Regulation Models of Mammalian Circadian Cycles.
We present hybrid system based gene regulation models of mammalian circadian cycle and
the results of model behaviour analysis. The models cover genes of two recently proposed …
the results of model behaviour analysis. The models cover genes of two recently proposed …