Reproducible computational research (RCR) is the keystone of the scientific method for in
silico analyses, packaging the transformation of raw data to published results. In addition to …

Scientific data analyses often combine several computational tools in automated pipelines,
or workflows. Thousands of such workflows have been used in the life sciences, though their …

Scientific workflow is one of the well-established pillars of large-scale computational science
and emerged as a torchbearer to formalize and structure a massive amount of complex …

Finding similar scientific workflow modules that can substitute essential components of the
privacy workflows from public repositories to create a personalized workflow is growing in …

Motivation The rapid expansion of Bioinformatics research has led to a proliferation of
computational tools for scientific analysis pipelines. However, constructing these pipelines is …

Scientific datasets and analysis pipelines are increasingly being shared publicly in the
interest of open science. However, mechanisms are lacking to reliably identify which …

Domain experts are increasingly employing machine learning to solve their domain-specific
problems. This article presents to software engineering researchers the six key challenges …

Scientific workflow has become essential in software engineering because it provides a
structured approach to designing, executing, and analyzing scientific experiments. Software …

In this thesis, I address the problem of computational tool recommendation to suggest during
the construction of life science analysis workflows. The major motivation for such a system is …

Background Galaxy is a web-based open-source platform for scientific analyses.
Researchers use thousands of high-quality tools and workflows for their respective analyses …