The five pillars of computational reproducibility: bioinformatics and beyond

M Ziemann, P Poulain, A Bora - Briefings in Bioinformatics, 2023 - academic.oup.com
Computational reproducibility is a simple premise in theory, but is difficult to achieve in
practice. Building upon past efforts and proposals to maximize reproducibility and rigor in …

A large-scale study on research code quality and execution

A Trisovic, MK Lau, T Pasquier, M Crosas - Scientific Data, 2022 - nature.com
This article presents a study on the quality and execution of research code from publicly-
available replication datasets at the Harvard Dataverse repository. Research code is …

Successes and struggles with computational reproducibility: lessons from the fragile families challenge

DM Liu, MJ Salganik - Socius, 2019 - journals.sagepub.com
Reproducibility is fundamental to science, and an important component of reproducibility is
computational reproducibility: the ability of a researcher to recreate the results of a published …

Evaluating tools for enhancing reproducibility in computational scientific experiments

L Costa, S Barbosa, J Cunha - Proceedings of the 2nd ACM Conference …, 2024 - dl.acm.org
Ensuring the reproducibility of computational scientific experiments is crucial for advancing
research and fostering scientific integrity. However, achieving reproducibility poses …

A backend platform for supporting the reproducibility of computational experiments

L Costa, S Barbosa, J Cunha - arXiv preprint arXiv:2308.00703, 2023 - arxiv.org
In recent years, the research community has raised serious questions about the
reproducibility of scientific work. In particular, since many studies include some kind of …

Using introspection to collect provenance in R

B Lerner, E Boose, L Perez - Informatics, 2018 - mdpi.com
Data provenance is the history of an item of data from the point of its creation to its present
state. It can support science by improving understanding of and confidence in data …

Exploring reproducibility and FAIR principles in data science using ecological niche modeling as a case study

ML Mondelli, A Townsend Peterson… - Advances in Conceptual …, 2019 - Springer
Reproducibility is a fundamental requirement of the scientific process since it enables
outcomes to be replicated and verified. Computational scientific experiments can benefit …

Towards an IDE for Scientific Computational Experiments

L Costa, S Barbosa, J Cunha - 2023 IEEE Symposium on …, 2023 - ieeexplore.ieee.org
In recent years, the research community has raised serious questions about the replicability
and reproducibility of scientific work. In particular, since many studies include some kind of …

Trust, but verify: An investigation of methods of verification and dissemination of computational research artifacts for transparency and reproducibility

CA Willis - 2020 - ideals.illinois.edu
In this study, I investigate how research communities are addressing concerns about the
quality and rigor of computational research. I focus specifically on initiatives to expand the …

[PDF][PDF] SHORT: Evaluating Tools for Enhancing Reproducibility in Computational Scientific Experiments

L Costa, S Barbosa, J Cunha - 2024 - researchgate.net
Ensuring the reproducibility of computational scientific experiments is crucial for advancing
research and fostering scientific integrity. However, achieving reproducibility poses …