Molecular dynamics simulations in drug discovery and pharmaceutical development

OMH Salo-Ahen, I Alanko, R Bhadane, AMJJ Bonvin… - Processes, 2020 - mdpi.com
Molecular dynamics (MD) simulations have become increasingly useful in the modern drug
development process. In this review, we give a broad overview of the current application …

Molecular dynamics-driven drug discovery: leaping forward with confidence

A Ganesan, ML Coote, K Barakat - Drug discovery today, 2017 - Elsevier
Highlights•Currently, developing a market-approved drug costs a staggering $2.6 billion.•In
silico methods have become an important strategy for narrowing down on promising lead …

Inside HDACs with more selective HDAC inhibitors

J Roche, P Bertrand - European journal of medicinal chemistry, 2016 - Elsevier
Inhibitors of histone deacetylases (HDACs) are nowadays part of the therapeutic arsenal
mainly against cancers, with four compounds approved by the Food and Drug …

Optimized structure of the traffic flow forecasting model with a deep learning approach

HF Yang, TS Dillon, YPP Chen - IEEE transactions on neural …, 2016 - ieeexplore.ieee.org
Forecasting accuracy is an important issue for successful intelligent traffic management,
especially in the domain of traffic efficiency and congestion reduction. The dawning of the …

Improvements, trends, and new ideas in molecular docking: 2012–2013 in review

E Yuriev, J Holien, PA Ramsland - Journal of Molecular …, 2015 - Wiley Online Library
Molecular docking is a computational method for predicting the placement of ligands in the
binding sites of their receptor (s). In this review, we discuss the methodological …

The latest automated docking technologies for novel drug discovery

J Caballero - Expert opinion on drug discovery, 2021 - Taylor & Francis
Introduction Molecular docking has been consolidated as one of the most important methods
in the molecular modeling field. It has been recognized as a prominent tool in the study of …

Novel spiroindoline HDAC inhibitors: Synthesis, molecular modelling and biological studies

M Brindisi, J Senger, C Cavella, A Grillo… - European Journal of …, 2018 - Elsevier
This paper describes the rational development of a series of novel spiroindoline derivatives
endowed with selective inhibitory activity on the HDAC6 isoform. A convenient …

QSAR studies on hydroxamic acids: a fascinating family of chemicals with a wide spectrum of activities

SP Gupta - Chemical reviews, 2015 - ACS Publications
Hydroxamic acids constitute a unique family of chemicals with multiple biological activities,
because they act as potent and selective inhibitors of a large number of enzymes, such as …

Applications of computer-aided approaches in the development of hepatitis C antiviral agents

A Ganesan, K Barakat - Expert Opinion on Drug Discovery, 2017 - Taylor & Francis
ABSTRACT Introduction: Hepatitis C virus (HCV) is a global health problem that causes
several chronic life-threatening liver diseases. The numbers of people affected by HCV are …

Modelling and enhanced molecular dynamics to steer structure-based drug discovery

S Kalyaanamoorthy, YPP Chen - Progress in biophysics and molecular …, 2014 - Elsevier
The ever-increasing gap between the availabilities of the genome sequences and the crystal
structures of proteins remains one of the significant challenges to the modern drug discovery …