The spin label amino acid TOAC and its uses in studies of peptides: chemical, physicochemical, spectroscopic, and conformational aspects

S Schreier, JC Bozelli, N Marín, RFF Vieira… - Biophysical …, 2012 - Springer
We review work on the paramagnetic amino acid 2, 2, 6, 6-tetramethyl-N-oxyl-4-amino-4-
carboxylic acid, TOAC, and its applications in studies of peptides and peptide synthesis …

Structural dynamics of bio-macromolecules by NMR: The slowly relaxing local structure approach

E Meirovitch, YE Shapiro, A Polimeno… - Progress in nuclear …, 2010 - Elsevier
Protein dynamics by NMR has been reviewed extensively in recent years [1–10]. These
surveys show decisively that information on structure should be complemented by …

Quantum chemistry and EPR parameters

F Neese, RK Harris, RL Wasylishen - 2017 - books.google.com
The mathematical workhorse for the EPR spectroscopist is the spin Hamiltonian (SH). An
analysis of a set of experiments will lead to a set of SH parameters. Once inserted back into …

General theoretical/computational tool for interpreting NMR spin relaxation in proteins

M Zerbetto, A Polimeno… - The Journal of Physical …, 2009 - ACS Publications
We developed in recent years the slowly relaxing local structure (SRLS) approach for
analyzing NMR spin relaxation in proteins. SRLS is a two-body coupled rotator model which …

[HTML][HTML] Modeling of motional EPR spectra using hindered Brownian rotational diffusion and the stochastic Liouville equation

J Lehner, S Stoll - The Journal of Chemical Physics, 2020 - pubs.aip.org
Electron paramagnetic resonance (EPR) spectra of molecular spin centers undergoing
reorientational motion are commonly simulated using the stochastic Liouville equation (SLE) …

Computational Modeling and Least‐Squares Fittingof EPR Spectra

S Stoll - Multifrequency electron paramagnetic resonance: Data …, 2014 - Wiley Online Library
In EPR (electron paramagnetic resonance) spectroscopy, computer simulation and least-
squares fitting are essential in extracting quantitative structural and dynamic parameters …

Hydrodynamic modeling of diffusion tensor properties of flexible molecules

V Barone, M Zerbetto… - Journal of computational …, 2009 - Wiley Online Library
We present a computationally efficient implementation of hydrodynamic modeling for the
evaluation of diffusion tensors of molecules with internal degrees of freedom, adapted to …

Unraveling Solvent-Driven Equilibria between α- and 310-Helices through an Integrated Spin Labeling and Computational Approach

S Carlotto, P Cimino, M Zerbetto, L Franco… - Journal of the …, 2007 - ACS Publications
In this work we present an effective and flexible computational approach, which is the result
of an ongoing development in our groups, allowing the complete a priori simulation of the …

Simulation of electron spin resonance spectroscopy in diverse environments: An integrated approach

M Zerbetto, A Polimeno, V Barone - Computer Physics Communications, 2009 - Elsevier
We discuss in this work a new software tool, named E-SpiReS (Electron Spin Resonance
Simulations), aimed at the interpretation of dynamical properties of molecules in fluids from …

Stochastic modeling of macromolecules in solution. I. Relaxation processes

A Polimeno, M Zerbetto, D Abergel - The Journal of Chemical Physics, 2019 - pubs.aip.org
A framework for the stochastic description of relaxation processes in flexible
macromolecules, including dissipative effects, is introduced from an atomistic point of view …