Current status of structural variation studies in plants
Structural variations (SVs) including gene presence/absence variations and copy number
variations are a common feature of genomes in plants and, together with single nucleotide …
variations are a common feature of genomes in plants and, together with single nucleotide …
Systems biology for crop improvement
In recent years, generation of large‐scale data from genome, transcriptome, proteome,
metabolome, epigenome, and others, has become routine in several plant species. Most of …
metabolome, epigenome, and others, has become routine in several plant species. Most of …
POWR1 is a domestication gene pleiotropically regulating seed quality and yield in soybean
Seed protein, oil content and yield are highly correlated agronomically important traits that
essentially account for the economic value of soybean. The underlying molecular …
essentially account for the economic value of soybean. The underlying molecular …
A novel natural variation in the promoter of GmCHX1 regulates conditional gene expression to improve salt tolerance in soybean
Y Li, H Ye, TD Vuong, L Zhou, TD Do… - Journal of …, 2024 - academic.oup.com
Identification and characterization of soybean germplasm and gene (s)/allele (s) for salt
tolerance is an effective way to develop improved varieties for saline soils. Previous studies …
tolerance is an effective way to develop improved varieties for saline soils. Previous studies …
Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean
Cultivar Williams 82 has served as the reference genome for the soybean research
community since 2008, but is known to have areas of genomic heterogeneity among …
community since 2008, but is known to have areas of genomic heterogeneity among …
Haplotype mapping uncovers unexplored variation in wild and domesticated soybean at the major protein locus cqProt-003
Key message The major soy protein QTL, cqProt-003, was analysed for haplotype diversity
and global distribution, and results indicate 304 bp deletion and variable tandem repeats in …
and global distribution, and results indicate 304 bp deletion and variable tandem repeats in …
Development of a versatile resource for post-genomic research through consolidating and characterizing 1500 diverse wild and cultivated soybean genomes
Background With advances in next-generation sequencing technologies, an unprecedented
amount of soybean accessions has been sequenced by many individual studies and made …
amount of soybean accessions has been sequenced by many individual studies and made …
The Allele Catalog Tool: a web-based interactive tool for allele discovery and analysis
Background The advancement of sequencing technologies today has made a plethora of
whole-genome re-sequenced (WGRS) data publicly available. However, research utilizing …
whole-genome re-sequenced (WGRS) data publicly available. However, research utilizing …
Genetic and genomic resources for soybean breeding research
Soybean (Glycine max) is a legume species of significant economic and nutritional value.
The yield of soybean continues to increase with the breeding of improved varieties, and this …
The yield of soybean continues to increase with the breeding of improved varieties, and this …
Fast and efficient root phenotyping via pose estimation
EM Berrigan, L Wang, H Carrillo, K Echegoyen… - Plant …, 2024 - spj.science.org
Image segmentation is commonly used to estimate the location and shape of plants and
their external structures. Segmentation masks are then used to localize landmarks of interest …
their external structures. Segmentation masks are then used to localize landmarks of interest …