Single-cell image analysis to explore cell-to-cell heterogeneity in isogenic populations

MM Usaj, CHL Yeung, H Friesen, C Boone… - Cell systems, 2021 - cell.com
Single-cell image analysis provides a powerful approach for studying cell-to-cell
heterogeneity, which is an important attribute of isogenic cell populations, from microbial …

Genomic Adaptations of Saccharomyces Genus to Wine Niche

E García-Ríos, JM Guillamón - Microorganisms, 2022 - mdpi.com
Wine yeast have been exposed to harsh conditions for millennia, which have led to adaptive
evolutionary strategies. Thus, wine yeasts from Saccharomyces genus are considered an …

Systematic genetics and single‐cell imaging reveal widespread morphological pleiotropy and cell‐to‐cell variability

M Mattiazzi Usaj, N Sahin, H Friesen… - Molecular systems …, 2020 - embopress.org
Our ability to understand the genotype‐to‐phenotype relationship is hindered by the lack of
detailed understanding of phenotypes at a single‐cell level. To systematically assess cell‐to …

YeastMate: neural network-assisted segmentation of mating and budding events in Saccharomyces cerevisiae

D Bunk, J Moriasy, F Thoma, C Jakubke… - …, 2022 - academic.oup.com
Here, we introduce YeastMate, a user-friendly deep learning-based application for
automated detection and segmentation of Saccharomyces cerevisiae cells and their mating …

From observing to predicting single-cell structure and function with high-throughput/high-content microscopy

A Chessel, RE Carazo Salas - Essays in biochemistry, 2019 - portlandpress.com
In the past 15 years, cell-based microscopy has evolved its focus from observing cell
function to aiming to predict it. In particular—powered by breakthroughs in computer vision …

Chemical diversity and mode of action of natural products targeting lipids in the eukaryotic cell membrane

S Nishimura, N Matsumori - Natural product reports, 2020 - pubs.rsc.org
Covering: up to 2019 Nature furnishes bioactive compounds (natural products) with complex
chemical structures, yet with simple, sophisticated molecular mechanisms. When natural …

Testing the neutral hypothesis of phenotypic evolution

WC Ho, Y Ohya, J Zhang - Proceedings of the National …, 2017 - National Acad Sciences
Although evolution by natural selection is widely regarded as the most important principle of
biology, it is unknown whether phenotypic variations within and between species are mostly …

AI-based forecasting of ethanol fermentation using yeast morphological data

K Itto-Nakama, S Watanabe, N Kondo… - Bioscience …, 2022 - academic.oup.com
Several industries require getting information of products as soon as possible during
fermentation. However, the trade-off between sensing speed and data quantity presents …

High-dimensional single-cell phenotyping reveals extensive haploinsufficiency

S Ohnuki, Y Ohya - PLoS biology, 2018 - journals.plos.org
Haploinsufficiency, a dominant phenotype caused by a heterozygous loss-of-function
mutation, has been rarely observed. However, high-dimensional single-cell phenotyping of …

History, lineage and phenotypic differentiation of sake yeast

Y Ohya, M Kashima - Bioscience, biotechnology, and …, 2019 - academic.oup.com
Sake yeast was first isolated as a single yeast strain, Saccharomyces sake, during the Meiji
era. Yeast strains suitable for sake fermentation were subsequently isolated from sake …