Single-cell image analysis to explore cell-to-cell heterogeneity in isogenic populations
Single-cell image analysis provides a powerful approach for studying cell-to-cell
heterogeneity, which is an important attribute of isogenic cell populations, from microbial …
heterogeneity, which is an important attribute of isogenic cell populations, from microbial …
Genomic Adaptations of Saccharomyces Genus to Wine Niche
E García-Ríos, JM Guillamón - Microorganisms, 2022 - mdpi.com
Wine yeast have been exposed to harsh conditions for millennia, which have led to adaptive
evolutionary strategies. Thus, wine yeasts from Saccharomyces genus are considered an …
evolutionary strategies. Thus, wine yeasts from Saccharomyces genus are considered an …
Systematic genetics and single‐cell imaging reveal widespread morphological pleiotropy and cell‐to‐cell variability
M Mattiazzi Usaj, N Sahin, H Friesen… - Molecular systems …, 2020 - embopress.org
Our ability to understand the genotype‐to‐phenotype relationship is hindered by the lack of
detailed understanding of phenotypes at a single‐cell level. To systematically assess cell‐to …
detailed understanding of phenotypes at a single‐cell level. To systematically assess cell‐to …
YeastMate: neural network-assisted segmentation of mating and budding events in Saccharomyces cerevisiae
D Bunk, J Moriasy, F Thoma, C Jakubke… - …, 2022 - academic.oup.com
Here, we introduce YeastMate, a user-friendly deep learning-based application for
automated detection and segmentation of Saccharomyces cerevisiae cells and their mating …
automated detection and segmentation of Saccharomyces cerevisiae cells and their mating …
From observing to predicting single-cell structure and function with high-throughput/high-content microscopy
A Chessel, RE Carazo Salas - Essays in biochemistry, 2019 - portlandpress.com
In the past 15 years, cell-based microscopy has evolved its focus from observing cell
function to aiming to predict it. In particular—powered by breakthroughs in computer vision …
function to aiming to predict it. In particular—powered by breakthroughs in computer vision …
Chemical diversity and mode of action of natural products targeting lipids in the eukaryotic cell membrane
S Nishimura, N Matsumori - Natural product reports, 2020 - pubs.rsc.org
Covering: up to 2019 Nature furnishes bioactive compounds (natural products) with complex
chemical structures, yet with simple, sophisticated molecular mechanisms. When natural …
chemical structures, yet with simple, sophisticated molecular mechanisms. When natural …
Testing the neutral hypothesis of phenotypic evolution
Although evolution by natural selection is widely regarded as the most important principle of
biology, it is unknown whether phenotypic variations within and between species are mostly …
biology, it is unknown whether phenotypic variations within and between species are mostly …
AI-based forecasting of ethanol fermentation using yeast morphological data
K Itto-Nakama, S Watanabe, N Kondo… - Bioscience …, 2022 - academic.oup.com
Several industries require getting information of products as soon as possible during
fermentation. However, the trade-off between sensing speed and data quantity presents …
fermentation. However, the trade-off between sensing speed and data quantity presents …
High-dimensional single-cell phenotyping reveals extensive haploinsufficiency
Haploinsufficiency, a dominant phenotype caused by a heterozygous loss-of-function
mutation, has been rarely observed. However, high-dimensional single-cell phenotyping of …
mutation, has been rarely observed. However, high-dimensional single-cell phenotyping of …
History, lineage and phenotypic differentiation of sake yeast
Y Ohya, M Kashima - Bioscience, biotechnology, and …, 2019 - academic.oup.com
Sake yeast was first isolated as a single yeast strain, Saccharomyces sake, during the Meiji
era. Yeast strains suitable for sake fermentation were subsequently isolated from sake …
era. Yeast strains suitable for sake fermentation were subsequently isolated from sake …