Advances and trends in omics technology development

X Dai, L Shen - Frontiers in Medicine, 2022 - frontiersin.org
The human history has witnessed the rapid development of technologies such as high-
throughput sequencing and mass spectrometry that led to the concept of 'omics' and …

Complex networks: Structure and dynamics

S Boccaletti, V Latora, Y Moreno, M Chavez… - Physics reports, 2006 - Elsevier
Coupled biological and chemical systems, neural networks, social interacting species, the
Internet and the World Wide Web, are only a few examples of systems composed by a large …

A scored human protein–protein interaction network to catalyze genomic interpretation

T Li, R Wernersson, RB Hansen, H Horn, J Mercer… - Nature …, 2017 - nature.com
Genome-scale human protein–protein interaction networks are critical to understanding cell
biology and interpreting genomic data, but challenging to produce experimentally. Through …

Network biology: understanding the cell's functional organization

AL Barabasi, ZN Oltvai - Nature reviews genetics, 2004 - nature.com
A key aim of postgenomic biomedical research is to systematically catalogue all molecules
and their interactions within a living cell. There is a clear need to understand how these …

An automated method for finding molecular complexes in large protein interaction networks

GD Bader, CWV Hogue - BMC bioinformatics, 2003 - Springer
Background Recent advances in proteomics technologies such as two-hybrid, phage
display and mass spectrometry have enabled us to create a detailed map of biomolecular …

BioGRID: a general repository for interaction datasets

C Stark, BJ Breitkreutz, T Reguly, L Boucher… - Nucleic acids …, 2006 - academic.oup.com
Access to unified datasets of protein and genetic interactions is critical for interrogation of
gene/protein function and analysis of global network properties. BioGRID is a freely …

Associating genes and protein complexes with disease via network propagation

O Vanunu, O Magger, E Ruppin, T Shlomi… - PLoS computational …, 2010 - journals.plos.org
A fundamental challenge in human health is the identification of disease-causing genes.
Recently, several studies have tackled this challenge via a network-based approach …

Proteome survey reveals modularity of the yeast cell machinery

AC Gavin, P Aloy, P Grandi, R Krause, M Boesche… - Nature, 2006 - nature.com
Protein complexes are key molecular entities that integrate multiple gene products to
perform cellular functions. Here we report the first genome-wide screen for complexes in an …

Global mapping of the yeast genetic interaction network

AHY Tong, G Lesage, GD Bader, H Ding, H Xu, X Xin… - science, 2004 - science.org
A genetic interaction network containing∼ 1000 genes and∼ 4000 interactions was
mapped by crossing mutations in 132 different query genes into a set of∼ 4700 viable gene …

HINT: High-quality protein interactomes and their applications in understanding human disease

J Das, H Yu - BMC systems biology, 2012 - Springer
Background A global map of protein-protein interactions in cellular systems provides key
insights into the workings of an organism. A repository of well-validated high-quality protein …