Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

TE Cruickshank, MW Hahn - Molecular ecology, 2014 - Wiley Online Library
The metaphor of 'genomic islands of speciation'was first used to describe heterogeneous
differentiation among loci between the genomes of closely related species. The biological …

Applications of next generation sequencing in molecular ecology of non-model organisms

R Ekblom, J Galindo - Heredity, 2011 - nature.com
As most biologists are probably aware, technological advances in molecular biology during
the last few years have opened up possibilities to rapidly generate large-scale sequencing …

The industrial melanism mutation in British peppered moths is a transposable element

AE Hof, P Campagne, DJ Rigden, CJ Yung, J Lingley… - Nature, 2016 - nature.com
Discovering the mutational events that fuel adaptation to environmental change remains an
important challenge for evolutionary biology. The classroom example of a visible …

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

C Holt, M Yandell - BMC bioinformatics, 2011 - Springer
Background Second-generation sequencing technologies are precipitating major shifts with
regards to what kinds of genomes are being sequenced and how they are annotated. While …

Recombination rate variation shapes barriers to introgression across butterfly genomes

SH Martin, JW Davey, C Salazar, CD Jiggins - PLoS biology, 2019 - journals.plos.org
Hybridisation and introgression can dramatically alter the relationships among groups of
species, leading to phylogenetic discordance across the genome and between populations …

Genome-wide evidence for speciation with gene flow in Heliconius butterflies

SH Martin, KK Dasmahapatra, NJ Nadeau… - Genome …, 2013 - genome.cshlp.org
Most speciation events probably occur gradually, without complete and immediate
reproductive isolation, but the full extent of gene flow between diverging species has rarely …

Chromosomal rearrangements maintain a polymorphic supergene controlling butterfly mimicry

M Joron, L Frezal, RT Jones, NL Chamberlain, SF Lee… - Nature, 2011 - nature.com
Supergenes are tight clusters of loci that facilitate the co-segregation of adaptive variation,
providing integrated control of complex adaptive phenotypes. Polymorphic supergenes, in …

Exploring evolutionary relationships across the genome using topology weighting

SH Martin, SM Van Belleghem - Genetics, 2017 - academic.oup.com
We introduce the concept of topology weighting, a method for quantifying relationships
between taxa that are not necessarily monophyletic, and visualizing how these relationships …

Adaptive Introgression across Species Boundaries in Heliconius Butterflies

C Pardo-Diaz, C Salazar, SW Baxter, C Merot… - PLoS …, 2012 - journals.plos.org
It is widely documented that hybridisation occurs between many closely related species, but
the importance of introgression in adaptive evolution remains unclear, especially in animals …

optix Drives the Repeated Convergent Evolution of Butterfly Wing Pattern Mimicry

RD Reed, R Papa, A Martin, HM Hines… - Science, 2011 - science.org
Mimicry—whereby warning signals in different species evolve to look similar—has long
served as a paradigm of convergent evolution. Little is known, however, about the genes …