Classification of intrinsically disordered regions and proteins

R Van Der Lee, M Buljan, B Lang, RJ Weatheritt… - Chemical …, 2014 - ACS Publications
Over the past decade, we have observed a massive increase in the amount of information
describing protein sequences from a variety of organisms. 1, 2 While this may reflect the …

Intrinsically unstructured proteins and their functions

HJ Dyson, PE Wright - Nature reviews Molecular cell biology, 2005 - nature.com
Many gene sequences in eukaryotic genomes encode entire proteins or large segments of
proteins that lack a well-structured three-dimensional fold. Disordered regions can be highly …

DisProt in 2024: improving function annotation of intrinsically disordered proteins

MC Aspromonte, MV Nugnes, F Quaglia… - Nucleic Acids …, 2024 - academic.oup.com
Abstract DisProt (URL: https://disprot. org) is the gold standard database for intrinsically
disordered proteins and regions, providing valuable information about their functions. The …

DisProt 7.0: a major update of the database of disordered proteins

D Piovesan, F Tabaro, I Mičetić, M Necci… - Nucleic acids …, 2017 - academic.oup.com
Abstract The Database of Protein Disorder (DisProt, URL: www. disprot. org) has been
significantly updated and upgraded since its last major renewal in 2007. The current release …

Improving protein disorder prediction by deep bidirectional long short-term memory recurrent neural networks

J Hanson, Y Yang, K Paliwal, Y Zhou - Bioinformatics, 2017 - academic.oup.com
Motivation Capturing long-range interactions between structural but not sequence neighbors
of proteins is a long-standing challenging problem in bioinformatics. Recently, long short …

Length-dependent prediction of protein intrinsic disorder

K Peng, P Radivojac, S Vucetic, AK Dunker… - BMC …, 2006 - Springer
Background Due to the functional importance of intrinsically disordered proteins or protein
regions, prediction of intrinsic protein disorder from amino acid sequence has become an …

FoldIndex©: a simple tool to predict whether a given protein sequence is intrinsically unfolded

J Prilusky, CE Felder, T Zeev-Ben-Mordehai… - …, 2005 - academic.oup.com
An easy-to-use, versatile and freely available graphic web server, FoldIndex© is described:
it predicts if a given protein sequence is intrinsically unfolded implementing the algorithm of …

Hybrid feature selection by combining filters and wrappers

HH Hsu, CW Hsieh, MD Lu - Expert Systems with Applications, 2011 - Elsevier
Feature selection aims at finding the most relevant features of a problem domain. It is very
helpful in improving computational speed and prediction accuracy. However, identification of …

Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling

VN Uversky, CJ Oldfield… - Journal of Molecular …, 2005 - Wiley Online Library
Regulation, recognition and cell signaling involve the coordinated actions of many players.
To achieve this coordination, each participant must have a valid identification (ID) that is …

SPOT-Disorder2: improved protein intrinsic disorder prediction by ensembled deep learning

J Hanson, KK Paliwal, T Litfin… - Genomics, Proteomics …, 2019 - academic.oup.com
Intrinsically disordered or unstructured proteins (or regions in proteins) have been found to
be important in a wide range of biological functions and implicated in many diseases. Due to …