Interactions with aromatic rings in chemical and biological recognition
EA Meyer, RK Castellano… - Angewandte Chemie …, 2003 - Wiley Online Library
Intermolecular interactions involving aromatic rings are key processes in both chemical and
biological recognition. Their understanding is essential for rational drug design and lead …
biological recognition. Their understanding is essential for rational drug design and lead …
The thermodynamics of DNA structural motifs
J SantaLucia Jr, D Hicks - Annu. Rev. Biophys. Biomol. Struct., 2004 - annualreviews.org
▪ Abstract DNA secondary structure plays an important role in biology, genotyping
diagnostics, a variety of molecular biology techniques, in vitro–selected DNA catalysts …
diagnostics, a variety of molecular biology techniques, in vitro–selected DNA catalysts …
Primer3—new capabilities and interfaces
A Untergasser, I Cutcutache, T Koressaar… - Nucleic acids …, 2012 - academic.oup.com
Polymerase chain reaction (PCR) is a basic molecular biology technique with a multiplicity
of uses, including deoxyribonucleic acid cloning and sequencing, functional analysis of …
of uses, including deoxyribonucleic acid cloning and sequencing, functional analysis of …
On the biophysics and kinetics of toehold-mediated DNA strand displacement
N Srinivas, TE Ouldridge, P Šulc… - Nucleic acids …, 2013 - academic.oup.com
Dynamic DNA nanotechnology often uses toehold-mediated strand displacement for
controlling reaction kinetics. Although the dependence of strand displacement kinetics on …
controlling reaction kinetics. Although the dependence of strand displacement kinetics on …
Control of DNA strand displacement kinetics using toehold exchange
DNA is increasingly being used as the engineering material of choice for the construction of
nanoscale circuits, structures, and motors. Many of these enzyme-free constructions function …
nanoscale circuits, structures, and motors. Many of these enzyme-free constructions function …
Mfold web server for nucleic acid folding and hybridization prediction
M Zuker - Nucleic acids research, 2003 - academic.oup.com
The abbreviated name,'mfold web server', describes a number of closely related software
applications available on the World Wide Web (WWW) for the prediction of the secondary …
applications available on the World Wide Web (WWW) for the prediction of the secondary …
RNAstructure: software for RNA secondary structure prediction and analysis
JS Reuter, DH Mathews - BMC bioinformatics, 2010 - Springer
Background To understand an RNA sequence's mechanism of action, the structure must be
known. Furthermore, target RNA structure is an important consideration in the design of …
known. Furthermore, target RNA structure is an important consideration in the design of …
An extended APOBEC3A mutation signature in cancer
A Langenbucher, D Bowen, R Sakhtemani… - Nature …, 2021 - nature.com
APOBEC mutagenesis, a major driver of cancer evolution, is known for targeting TpC sites in
DNA. Recently, we showed that APOBEC3A (A3A) targets DNA hairpin loops. Here, we …
DNA. Recently, we showed that APOBEC3A (A3A) targets DNA hairpin loops. Here, we …
Planar chiral [2.2] paracyclophanes: from synthetic curiosity to applications in asymmetric synthesis and materials
Planar chiral [2.2] paracyclophane-based ligands and employment of such enantiopure
representative ligands to facilitate selective transformation of prochiral or racemic …
representative ligands to facilitate selective transformation of prochiral or racemic …
Base-stacking and base-pairing contributions into thermal stability of the DNA double helix
P Yakovchuk, E Protozanova… - Nucleic acids …, 2006 - academic.oup.com
Two factors are mainly responsible for the stability of the DNA double helix: base pairing
between complementary strands and stacking between adjacent bases. By studying DNA …
between complementary strands and stacking between adjacent bases. By studying DNA …