Microbial production of vitamin B12: a review and future perspectives

H Fang, J Kang, D Zhang - Microbial cell factories, 2017 - Springer
Vitamin B 12 is an essential vitamin that is widely used in medical and food industries.
Vitamin B 12 biosynthesis is confined to few bacteria and archaea, and as such its …

Native and engineered promoters in natural product discovery

M Myronovskyi, A Luzhetskyy - Natural product reports, 2016 - pubs.rsc.org
Covers the period up to 2016 Bacterial-based natural products have long represented a
promising resource for the development of commercially relevant therapeutics, and more …

Engineering RGB color vision into Escherichia coli

J Fernandez-Rodriguez, F Moser, M Song… - Nature chemical …, 2017 - nature.com
Optogenetic tools use colored light to rapidly control gene expression in space and time. We
designed a genetically encoded system that gives Escherichia coli the ability to distinguish …

Computational design of small transcription activating RNAs for versatile and dynamic gene regulation

J Chappell, A Westbrook, M Verosloff… - Nature communications, 2017 - nature.com
A longstanding goal of synthetic biology has been the programmable control of cellular
functions. Central to this is the creation of versatile regulatory toolsets that allow for …

An automated model test system for systematic development and improvement of gene expression models

AC Reis, HM Salis - ACS synthetic biology, 2020 - ACS Publications
Gene expression models greatly accelerate the engineering of synthetic metabolic pathways
and genetic circuits by predicting sequence-function relationships and reducing trial-and …

Precise quantification of translation inhibition by mRNA structures that overlap with the ribosomal footprint in N-terminal coding sequences

A Espah Borujeni, D Cetnar, I Farasat… - Nucleic acids …, 2017 - academic.oup.com
A mRNA's translation rate is controlled by several sequence determinants, including the
presence of RNA structures within the N-terminal regions of its coding sequences. However …

Automated physics-based design of synthetic riboswitches from diverse RNA aptamers

A Espah Borujeni, DM Mishler, J Wang… - Nucleic acids …, 2016 - academic.oup.com
Riboswitches are shape-changing regulatory RNAs that bind chemicals and regulate gene
expression, directly coupling sensing to cellular actuation. However, it remains unclear how …

Translation initiation is controlled by RNA folding kinetics via a ribosome drafting mechanism

A Espah Borujeni, HM Salis - Journal of the American Chemical …, 2016 - ACS Publications
RNA folding plays an important role in controlling protein synthesis as well as other cellular
processes. Existing models have focused on how RNA folding energetics control translation …

Production of specific-molecular-weight hyaluronan by metabolically engineered Bacillus subtilis 168

P Jin, Z Kang, P Yuan, G Du, J Chen - Metabolic engineering, 2016 - Elsevier
Low-molecular-weight hyaluronan (LMW-HA) has attracted much attention because of its
many potential applications. Here, we efficiently produced specific LMW-HAs from sucrose …

Genetic circuit characterization by inferring RNA polymerase movement and ribosome usage

A Espah Borujeni, J Zhang, H Doosthosseini… - Nature …, 2020 - nature.com
To perform their computational function, genetic circuits change states through a symphony
of genetic parts that turn regulator expression on and off. Debugging is frustrated by an …