In pursuit of design principles of regulatory sequences
Instructions for when, where and to what level each gene should be expressed are encoded
within regulatory sequences. The importance of motifs recognized by DNA-binding …
within regulatory sequences. The importance of motifs recognized by DNA-binding …
In Silico Constraint-Based Strain Optimization Methods: the Quest for Optimal Cell Factories
Shifting from chemical to biotechnological processes is one of the cornerstones of 21st
century industry. The production of a great range of chemicals via biotechnological means is …
century industry. The production of a great range of chemicals via biotechnological means is …
Digital logic circuits in yeast with CRISPR-dCas9 NOR gates
Natural genetic circuits enable cells to make sophisticated digital decisions. Building equally
complex synthetic circuits in eukaryotes remains difficult, however, because commonly used …
complex synthetic circuits in eukaryotes remains difficult, however, because commonly used …
Integrative comparison of the role of the PHOSPHATE RESPONSE1 subfamily in phosphate signaling and homeostasis in rice
M Guo, W Ruan, C Li, F Huang, M Zeng, Y Liu… - Plant …, 2015 - academic.oup.com
Phosphorus (P), an essential macronutrient for all living cells, is indispensable for
agricultural production. Although Arabidopsis (Arabidopsis thaliana) PHOSPHATE …
agricultural production. Although Arabidopsis (Arabidopsis thaliana) PHOSPHATE …
Unraveling determinants of transcription factor binding outside the core binding site
Binding of transcription factors (TFs) to regulatory sequences is a pivotal step in the control
of gene expression. Despite many advances in the characterization of sequence motifs …
of gene expression. Despite many advances in the characterization of sequence motifs …
The robustness and evolvability of transcription factor binding sites
Robustness, the maintenance of a character in the presence of genetic change, can help
preserve adaptive traits but also may hinder evolvability, the ability to bring forth novel …
preserve adaptive traits but also may hinder evolvability, the ability to bring forth novel …
Two distinct promoter architectures centered on dynamic nucleosomes control ribosomal protein gene transcription
In yeast, ribosome production is controlled transcriptionally by tight coregulation of the 138
ribosomal protein genes (RPGs). RPG promoters display limited sequence homology, and …
ribosomal protein genes (RPGs). RPG promoters display limited sequence homology, and …
Core promoter sequence in yeast is a major determinant of expression level
S Lubliner, I Regev, M Lotan-Pompan… - Genome …, 2015 - genome.cshlp.org
The core promoter is the regulatory sequence to which RNA polymerase is recruited and
where it acts to initiate transcription. Here, we present the first comprehensive study of yeast …
where it acts to initiate transcription. Here, we present the first comprehensive study of yeast …
[PDF][PDF] Recent applications of synthetic biology tools for yeast metabolic engineering
MK Jensen, JD Keasling - FEMS Yeast Res, 2015 - haseloff.plantsci.cam.ac.uk
The last 20 years of metabolic engineering has enabled bio-based production of fuels and
chemicals from renewable carbon sources using cost-effective bioprocesses. Much of this …
chemicals from renewable carbon sources using cost-effective bioprocesses. Much of this …
Flexibility and structure of flanking DNA impact transcription factor affinity for its core motif
VR Yella, D Bhimsaria, D Ghoshdastidar… - Nucleic acids …, 2018 - academic.oup.com
Spatial and temporal expression of genes is essential for maintaining phenotype integrity.
Transcription factors (TFs) modulate expression patterns by binding to specific DNA …
Transcription factors (TFs) modulate expression patterns by binding to specific DNA …