Analysis of aptamer discovery and technology

MR Dunn, RM Jimenez, JC Chaput - Nature Reviews Chemistry, 2017 - nature.com
Aptamers are nucleic acid molecules that mimic antibodies by folding into complex 3D
shapes that bind to specific targets. Although some aptamers exist naturally as the ligand …

Fc‐fusion proteins: new developments and future perspectives

DM Czajkowsky, J Hu, Z Shao… - EMBO molecular medicine, 2012 - embopress.org
Since the first description in 1989 of CD4‐Fc‐fusion antagonists that inhibit human immune
deficiency virus entry into T cells, Fc‐fusion proteins have been intensely investigated for …

IgLM: Infilling language modeling for antibody sequence design

RW Shuai, JA Ruffolo, JJ Gray - Cell Systems, 2023 - cell.com
Discovery and optimization of monoclonal antibodies for therapeutic applications relies on
large sequence libraries but is hindered by developability issues such as low solubility, high …

Generative language modeling for antibody design

RW Shuai, JA Ruffolo, JJ Gray - BioRxiv, 2021 - biorxiv.org
Discovery and optimization of monoclonal antibodies for therapeutic applications relies on
large sequence libraries, but is hindered by developability issues such as low solubility, low …

Sepsis: mechanisms of bacterial injury to the patient

H Minasyan - Scandinavian journal of trauma, resuscitation and …, 2019 - Springer
In bacteremia the majority of bacterial species are killed by oxidation on the surface of
erythrocytes and digested by local phagocytes in the liver and the spleen. Sepsis-causing …

Computer-aided antibody design

D Kuroda, H Shirai, MP Jacobson… - … engineering, design & …, 2012 - academic.oup.com
Recent clinical trials using antibodies with low toxicity and high efficiency have raised
expectations for the development of next-generation protein therapeutics. However, the …

High-throughput generation of synthetic antibodies from highly functional minimalist phage-displayed libraries

FA Fellouse, K Esaki, S Birtalan, D Raptis… - Journal of molecular …, 2007 - Elsevier
We have previously established a minimalist approach to antibody engineering by using a
phage-displayed framework to support complementarity determining region (CDR) diversity …

Teaching an old scaffold new tricks: monobodies constructed using alternative surfaces of the FN3 scaffold

A Koide, J Wojcik, RN Gilbreth, RJ Hoey… - Journal of molecular …, 2012 - Elsevier
The fibronectin type III domain (FN3) has become one of the most widely used non-antibody
scaffolds for generating new binding proteins. Because of its structural homology to the …

The importance of being tyrosine: lessons in molecular recognition from minimalist synthetic binding proteins

S Koide, SS Sidhu - ACS chemical biology, 2009 - ACS Publications
Combinatorial libraries built with severely restricted chemical diversity have yielded highly
functional synthetic binding proteins. Structural analyses of these minimalist binding sites …

Large-scale network analysis reveals the sequence space architecture of antibody repertoires

E Miho, R Roškar, V Greiff, ST Reddy - Nature communications, 2019 - nature.com
The architecture of mouse and human antibody repertoires is defined by the sequence
similarity networks of the clones that compose them. The major principles that define the …