Named entity recognition and relation detection for biomedical information extraction

N Perera, M Dehmer, F Emmert-Streib - Frontiers in cell and …, 2020 - frontiersin.org
The number of scientific publications in the literature is steadily growing, containing our
knowledge in the biomedical, health, and clinical sciences. Since there is currently no …

In silico ADME/T modelling for rational drug design

Y Wang, J Xing, Y Xu, N Zhou, J Peng… - Quarterly reviews of …, 2015 - cambridge.org
In recent decades, in silico absorption, distribution, metabolism, excretion (ADME), and
toxicity (T) modelling as a tool for rational drug design has received considerable attention …

Comparative toxicogenomics database (CTD): update 2021

AP Davis, CJ Grondin, RJ Johnson… - Nucleic acids …, 2021 - academic.oup.com
Abstract The public Comparative Toxicogenomics Database (CTD; http://ctdbase. org/) is an
innovative digital ecosystem that relates toxicological information for chemicals, genes …

The comparative toxicogenomics database: update 2019

AP Davis, CJ Grondin, RJ Johnson… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Comparative Toxicogenomics Database (CTD; http://ctdbase. org/) is a premier
public resource for literature-based, manually curated associations between chemicals …

A network integration approach for drug-target interaction prediction and computational drug repositioning from heterogeneous information

Y Luo, X Zhao, J Zhou, J Yang, Y Zhang… - Nature …, 2017 - nature.com
The emergence of large-scale genomic, chemical and pharmacological data provides new
opportunities for drug discovery and repositioning. In this work, we develop a computational …

The support of human genetic evidence for approved drug indications

MR Nelson, H Tipney, JL Painter, J Shen, P Nicoletti… - Nature …, 2015 - nature.com
Over a quarter of drugs that enter clinical development fail because they are ineffective.
Growing insight into genes that influence human disease may affect how drug targets and …

The comparative toxicogenomics database: update 2017

AP Davis, CJ Grondin, RJ Johnson… - Nucleic acids …, 2017 - academic.oup.com
Abstract The Comparative Toxicogenomics Database (CTD; http://ctdbase. org/) provides
information about interactions between chemicals and gene products, and their …

DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes

J Piñero, N Queralt-Rosinach, A Bravo, J Deu-Pons… - Database, 2015 - academic.oup.com
DisGeNET is a comprehensive discovery platform designed to address a variety of
questions concerning the genetic underpinning of human diseases. DisGeNET contains …

Understanding multicellular function and disease with human tissue-specific networks

CS Greene, A Krishnan, AK Wong, E Ricciotti… - Nature …, 2015 - nature.com
Tissue and cell-type identity lie at the core of human physiology and disease. Understanding
the genetic underpinnings of complex tissues and individual cell lineages is crucial for …

[HTML][HTML] NeoDTI: neural integration of neighbor information from a heterogeneous network for discovering new drug–target interactions

F Wan, L Hong, A Xiao, T Jiang, J Zeng - Bioinformatics, 2019 - academic.oup.com
Results Inspired by recent advance of information passing and aggregation techniques that
generalize the convolution neural networks to mine large-scale graph data and greatly …