Using the ACMG/AMP framework to capture evidence related to predicted and observed impact on splicing: Recommendations from the ClinGen SVI Splicing …
LC Walker, M de la Hoya, GAR Wiggins, A Lindy… - The American Journal of …, 2023 - cell.com
Summary The American College of Medical Genetics and Genomics (ACMG)/Association for
Molecular Pathology (AMP) framework for classifying variants uses six evidence categories …
Molecular Pathology (AMP) framework for classifying variants uses six evidence categories …
SPiP: Splicing Prediction Pipeline, a machine learning tool for massive detection of exonic and intronic variant effects on mRNA splicing
Modeling splicing is essential for tackling the challenge of variant interpretation as each
nucleotide variation can be pathogenic by affecting pre‐mRNA splicing via …
nucleotide variation can be pathogenic by affecting pre‐mRNA splicing via …
Assessment of diagnostic outcomes of RNA genetic testing for hereditary cancer
Importance Performing DNA genetic testing (DGT) for hereditary cancer genes is now a well-
accepted clinical practice; however, the interpretation of DNA variation remains a challenge …
accepted clinical practice; however, the interpretation of DNA variation remains a challenge …
BRCA1—no matter how you splice it
D Li, LM Harlan-Williams, E Kumaraswamy, RA Jensen - Cancer research, 2019 - AACR
Abstract BRCA1 (breast cancer 1, early onset), a well-known breast cancer susceptibility
gene, is a highly alternatively spliced gene. BRCA1 alternative splicing may serve as an …
gene, is a highly alternatively spliced gene. BRCA1 alternative splicing may serve as an …
[HTML][HTML] Spectrum and genotyping strategies of “dark” genetic matter in germline susceptibility genes of tumour syndromes
A Bozsik, H Butz, VK Grolmusz, T Pócza… - Critical Reviews in …, 2024 - Elsevier
Purpose Despite the widespread use of high-throughput genotyping strategies, certain
mutation types remain understudied. We provide an overview of these often overlooked …
mutation types remain understudied. We provide an overview of these often overlooked …
Splicing predictions, minigene analyses, and ACMG‐AMP clinical classification of 42 germline PALB2 splice‐site variants
A Valenzuela‐Palomo, E Bueno‐Martínez… - The Journal of …, 2022 - Wiley Online Library
PALB2 loss‐of‐function variants confer high risk of developing breast cancer. Here we
present a systematic functional analysis of PALB2 splice‐site variants detected in …
present a systematic functional analysis of PALB2 splice‐site variants detected in …
Assessment of branch point prediction tools to predict physiological branch points and their alteration by variants
R Leman, H Tubeuf, S Raad, I Tournier, C Derambure… - BMC genomics, 2020 - Springer
Abstract Background Branch points (BPs) map within short motifs upstream of acceptor
splice sites (3'ss) and are essential for splicing of pre-mature mRNA. Several BP-dedicated …
splice sites (3'ss) and are essential for splicing of pre-mature mRNA. Several BP-dedicated …
Systematic Minigene-Based Splicing Analysis and Tentative Clinical Classification of 52 CHEK2 Splice-Site Variants
L Sanoguera-Miralles, A Valenzuela-Palomo… - Clinical …, 2024 - academic.oup.com
Background Disrupted pre-mRNA splicing is a frequent deleterious mechanism in hereditary
cancer. We aimed to functionally analyze candidate spliceogenic variants of the breast …
cancer. We aimed to functionally analyze candidate spliceogenic variants of the breast …
Mutational and splicing landscape in a cohort of 43,000 patients tested for hereditary cancer
C Horton, A Cass, BR Conner, L Hoang… - npj Genomic …, 2022 - nature.com
DNA germline genetic testing can identify individuals with cancer susceptibility. However,
DNA sequencing alone is limited in its detection and classification of mRNA splicing …
DNA sequencing alone is limited in its detection and classification of mRNA splicing …
Overview of the genetic causes of hereditary breast and ovarian cancer syndrome in a large French patient cohort
A Bouras, S Guidara, M Leone, A Buisson… - Cancers, 2023 - mdpi.com
Simple Summary Hereditary Breast and Ovarian Cancer syndrome (HBOC) is an inherited
trait that predisposes adults to an earlier onset of cancer than the general population. HBOC …
trait that predisposes adults to an earlier onset of cancer than the general population. HBOC …