Structural basis of the translational elongation cycle
RM Voorhees, V Ramakrishnan - Annual review of biochemistry, 2013 - annualreviews.org
The sequential addition of amino acids to a growing polypeptide chain is carried out by the
ribosome in a complicated multistep process called the elongation cycle. It involves accurate …
ribosome in a complicated multistep process called the elongation cycle. It involves accurate …
Protein elongation, co-translational folding and targeting
MV Rodnina, W Wintermeyer - Journal of molecular biology, 2016 - Elsevier
The elongation phase of protein synthesis defines the overall speed and fidelity of protein
synthesis and affects protein folding and targeting. The mechanisms of reactions taking …
synthesis and affects protein folding and targeting. The mechanisms of reactions taking …
A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome
YS Polikanov, TA Steitz, CA Innis - Nature structural & molecular …, 2014 - nature.com
During peptide-bond formation on the ribosome, the α-amine of an aminoacyl-tRNA attacks
the ester carbonyl carbon of a peptidyl-tRNA to yield a peptide lengthened by one amino …
the ester carbonyl carbon of a peptidyl-tRNA to yield a peptide lengthened by one amino …
Synthesis of polypeptides via bioinspired polymerization of in situ purified N-carboxyanhydrides
Ribozymes synthesize proteins in a highly regulated local environment to minimize side
reactions caused by various competing species. In contrast, it is challenging to prepare …
reactions caused by various competing species. In contrast, it is challenging to prepare …
Modulation of the rate of peptidyl transfer on the ribosome by the nature of substrates
I Wohlgemuth, S Brenner, M Beringer… - Journal of Biological …, 2008 - ASBMB
The ribosome catalyzes peptide bond formation between peptidyl-tRNA in the P site and
aminoacyl-tRNA in the A site. Here, we show that the nature of the C-terminal amino acid …
aminoacyl-tRNA in the A site. Here, we show that the nature of the C-terminal amino acid …
A structural view on the mechanism of the ribosome-catalyzed peptide bond formation
M Simonović, TA Steitz - Biochimica et Biophysica Acta (BBA)-Gene …, 2009 - Elsevier
The ribosome is a large ribonucleoprotein particle that translates genetic information
encoded in mRNA into specific proteins. Its highly conserved active site, the peptidyl …
encoded in mRNA into specific proteins. Its highly conserved active site, the peptidyl …
Different substrate-dependent transition states in the active site of the ribosome
S Kuhlenkoetter, W Wintermeyer, MV Rodnina - Nature, 2011 - nature.com
The active site of the ribosome, the peptidyl transferase centre, catalyses two reactions,
namely, peptide bond formation between peptidyl-tRNA and aminoacyl-tRNA as well as the …
namely, peptide bond formation between peptidyl-tRNA and aminoacyl-tRNA as well as the …
A two-step chemical mechanism for ribosome-catalysed peptide bond formation
The chemical step of natural protein synthesis, peptide bond formation, is catalysed by the
large subunit of the ribosome. Crystal structures have shown that the active site for peptide …
large subunit of the ribosome. Crystal structures have shown that the active site for peptide …
The transition state for peptide bond formation reveals the ribosome as a water trap
G Wallin, J Åqvist - Proceedings of the National Academy of …, 2010 - National Acad Sciences
Recent progress in elucidating the peptide bond formation process on the ribosome has led
to notion of a proton shuttle mechanism where the 2'-hydroxyl group of the P-site tRNA plays …
to notion of a proton shuttle mechanism where the 2'-hydroxyl group of the P-site tRNA plays …
The ribosome as a versatile catalyst: reactions at the peptidyl transferase center
MV Rodnina - Current Opinion in Structural Biology, 2013 - Elsevier
Highlights•The ribosome's active site catalyzes diverse chemical reactions.•Peptide bond
formation proceeds through a fully concerted proton shuttle mechanism.•The transition state …
formation proceeds through a fully concerted proton shuttle mechanism.•The transition state …