Structural basis of the translational elongation cycle

RM Voorhees, V Ramakrishnan - Annual review of biochemistry, 2013 - annualreviews.org
The sequential addition of amino acids to a growing polypeptide chain is carried out by the
ribosome in a complicated multistep process called the elongation cycle. It involves accurate …

Protein elongation, co-translational folding and targeting

MV Rodnina, W Wintermeyer - Journal of molecular biology, 2016 - Elsevier
The elongation phase of protein synthesis defines the overall speed and fidelity of protein
synthesis and affects protein folding and targeting. The mechanisms of reactions taking …

A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome

YS Polikanov, TA Steitz, CA Innis - Nature structural & molecular …, 2014 - nature.com
During peptide-bond formation on the ribosome, the α-amine of an aminoacyl-tRNA attacks
the ester carbonyl carbon of a peptidyl-tRNA to yield a peptide lengthened by one amino …

Synthesis of polypeptides via bioinspired polymerization of in situ purified N-carboxyanhydrides

Z Song, H Fu, J Wang, J Hui, T Xue… - Proceedings of the …, 2019 - National Acad Sciences
Ribozymes synthesize proteins in a highly regulated local environment to minimize side
reactions caused by various competing species. In contrast, it is challenging to prepare …

Modulation of the rate of peptidyl transfer on the ribosome by the nature of substrates

I Wohlgemuth, S Brenner, M Beringer… - Journal of Biological …, 2008 - ASBMB
The ribosome catalyzes peptide bond formation between peptidyl-tRNA in the P site and
aminoacyl-tRNA in the A site. Here, we show that the nature of the C-terminal amino acid …

A structural view on the mechanism of the ribosome-catalyzed peptide bond formation

M Simonović, TA Steitz - Biochimica et Biophysica Acta (BBA)-Gene …, 2009 - Elsevier
The ribosome is a large ribonucleoprotein particle that translates genetic information
encoded in mRNA into specific proteins. Its highly conserved active site, the peptidyl …

Different substrate-dependent transition states in the active site of the ribosome

S Kuhlenkoetter, W Wintermeyer, MV Rodnina - Nature, 2011 - nature.com
The active site of the ribosome, the peptidyl transferase centre, catalyses two reactions,
namely, peptide bond formation between peptidyl-tRNA and aminoacyl-tRNA as well as the …

A two-step chemical mechanism for ribosome-catalysed peptide bond formation

DA Hiller, V Singh, M Zhong, SA Strobel - Nature, 2011 - nature.com
The chemical step of natural protein synthesis, peptide bond formation, is catalysed by the
large subunit of the ribosome. Crystal structures have shown that the active site for peptide …

The transition state for peptide bond formation reveals the ribosome as a water trap

G Wallin, J Åqvist - Proceedings of the National Academy of …, 2010 - National Acad Sciences
Recent progress in elucidating the peptide bond formation process on the ribosome has led
to notion of a proton shuttle mechanism where the 2'-hydroxyl group of the P-site tRNA plays …

The ribosome as a versatile catalyst: reactions at the peptidyl transferase center

MV Rodnina - Current Opinion in Structural Biology, 2013 - Elsevier
Highlights•The ribosome's active site catalyzes diverse chemical reactions.•Peptide bond
formation proceeds through a fully concerted proton shuttle mechanism.•The transition state …