A review on mass spectrometry-based quantitative proteomics: Targeted and data independent acquisition
V Vidova, Z Spacil - Analytica chimica acta, 2017 - Elsevier
Mass spectrometry (MS) based proteomics have achieved a near-complete proteome
coverage in humans and in several other organisms, producing a wealth of information …
coverage in humans and in several other organisms, producing a wealth of information …
Network biology concepts in complex disease comorbidities
The co-occurrence of diseases can inform the underlying network biology of shared and
multifunctional genes and pathways. In addition, comorbidities help to elucidate the effects …
multifunctional genes and pathways. In addition, comorbidities help to elucidate the effects …
HIPPIE v2. 0: enhancing meaningfulness and reliability of protein–protein interaction networks
G Alanis-Lobato, MA Andrade-Navarro… - Nucleic acids …, 2016 - academic.oup.com
The increasing number of experimentally detected interactions between proteins makes it
difficult for researchers to extract the interactions relevant for specific biological processes or …
difficult for researchers to extract the interactions relevant for specific biological processes or …
An approach to spatiotemporally resolve protein interaction networks in living cells
BT Lobingier, R Hüttenhain, K Eichel, KB Miller… - Cell, 2017 - cell.com
Cells operate through protein interaction networks organized in space and time. Here, we
describe an approach to resolve both dimensions simultaneously by using proximity …
describe an approach to resolve both dimensions simultaneously by using proximity …
PP2A as a master regulator of the cell cycle
N Wlodarchak, Y Xing - Critical reviews in biochemistry and …, 2016 - Taylor & Francis
Abstract Protein phosphatase 2A (PP2A) plays a critical multi-faceted role in the regulation
of the cell cycle. It is known to dephosphorylate over 300 substrates involved in the cell …
of the cell cycle. It is known to dephosphorylate over 300 substrates involved in the cell …
Non-histone protein methylation as a regulator of cellular signalling and function
Abstract Methylation of Lys and Arg residues on non-histone proteins has emerged as a
prevalent post-translational modification and as an important regulator of cellular signal …
prevalent post-translational modification and as an important regulator of cellular signal …
Selected reaction monitoring–based proteomics: workflows, potential, pitfalls and future directions
P Picotti, R Aebersold - Nature methods, 2012 - nature.com
Selected reaction monitoring (SRM) is a targeted mass spectrometry technique that is
emerging in the field of proteomics as a complement to untargeted shotgun methods. SRM is …
emerging in the field of proteomics as a complement to untargeted shotgun methods. SRM is …
Next-generation proteomics: towards an integrative view of proteome dynamics
Next-generation sequencing allows the analysis of genomes, including those representing
disease states. However, the causes of most disorders are multifactorial, and systems-level …
disease states. However, the causes of most disorders are multifactorial, and systems-level …
Status of large-scale analysis of post-translational modifications by mass spectrometry
Cellular function can be controlled through the gene expression program, but often protein
post-translational modifications (PTMs) provide a more precise and elegant mechanism. Key …
post-translational modifications (PTMs) provide a more precise and elegant mechanism. Key …
Integrative approaches for finding modular structure in biological networks
A central goal of systems biology is to elucidate the structural and functional architecture of
the cell. To this end, large and complex networks of molecular interactions are being rapidly …
the cell. To this end, large and complex networks of molecular interactions are being rapidly …