Biochemistry and molecular biology of flaviviruses

NJ Barrows, RK Campos, KC Liao, KR Prasanth… - Chemical …, 2018 - ACS Publications
Flaviviruses, such as dengue, Japanese encephalitis, tick-borne encephalitis, West Nile,
yellow fever, and Zika viruses, are critically important human pathogens that sicken a …

Recommendations for performing, interpreting and reporting hydrogen deuterium exchange mass spectrometry (HDX-MS) experiments

GR Masson, JE Burke, NG Ahn, GS Anand… - Nature …, 2019 - nature.com
Hydrogen deuterium exchange mass spectrometry (HDX-MS) is a powerful biophysical
technique being increasingly applied to a wide variety of problems. As the HDX-MS …

SARS-CoV-2 S protein: ACE2 interaction reveals novel allosteric targets

PV Raghuvamsi, NK Tulsian, F Samsudin, X Qian… - Elife, 2021 - elifesciences.org
The Spike (S) protein is the main handle for SARS-CoV-2 to enter host cells via surface
ACE2 receptors. How ACE2 binding activates proteolysis of S protein is unknown. Here …

Advances in hydrogen/deuterium exchange mass spectrometry and the pursuit of challenging biological systems

EI James, TA Murphree, C Vorauer, JR Engen… - Chemical …, 2021 - ACS Publications
Solution-phase hydrogen/deuterium exchange (HDX) coupled to mass spectrometry (MS) is
a widespread tool for structural analysis across academia and the biopharmaceutical …

Pathogenesis and virulence of flavivirus infections

SW van Leur, T Heunis, D Munnur, S Sanyal - Virulence, 2021 - Taylor & Francis
The Flavivirus genus consists of> 70 members including several that are considered
significant human pathogens. Flaviviruses display a broad spectrum of diseases that can be …

Physics of viral dynamics

RF Bruinsma, GJL Wuite, WH Roos - Nature Reviews Physics, 2021 - nature.com
Viral capsids are often regarded as inert structural units, but in actuality they display
fascinating dynamics during different stages of their life cycle. With the advent of single …

Timeline of changes in spike conformational dynamics in emergent SARS-CoV-2 variants reveal progressive stabilization of trimer stalk with altered NTD dynamics

SM Braet, TSC Buckley, V Venkatakrishnan, KMA Dam… - Elife, 2023 - elifesciences.org
SARS-CoV-2 emergent variants are characterized by increased viral fitness and each shows
multiple mutations predominantly localized to the spike (S) protein. Here, amide …

Contemporary hydrogen deuterium exchange mass spectrometry

I Oganesyan, C Lento, DJ Wilson - Methods, 2018 - Elsevier
Hydrogen/deuterium exchange (HDX) mass spectrometry (MS) emerged as a tool for
biochemistry and structural biology around 25 years ago. It has since become a key …

Current status and perspectives on vaccine development against dengue virus infection

J Park, J Kim, YS Jang - Journal of Microbiology, 2022 - Springer
Dengue virus (DENV) consists of four serotypes in the family Flaviviridae and is a causative
agent of dengue fever, dengue hemorrhagic fever, and dengue shock syndrome. DENV is …

Conformational analysis of complex protein states by hydrogen/deuterium exchange mass spectrometry (HDX-MS): Challenges and emerging solutions

E Trabjerg, ZE Nazari, KD Rand - TrAC Trends in Analytical Chemistry, 2018 - Elsevier
Hydrogen/deuterium exchange mass spectrometry (HDX-MS) has within the last 25 years
evolved to become a well-established technique for analysing the solution-phase …