By focusing on essential features, while averaging over less important details, coarse-
grained (CG) models provide significant computational and conceptual advantages with …

The growing interest in the DNA‐based mesoscale systems of biological and nonbiological
nature has encouraged the computational molecular science community to develop coarse …

To simulate long time and length scale processes involving DNA it is necessary to use a
coarse-grained description. Here we provide an overview of different approaches to such …

A novel hierarchy of coarse-grain, sequence-dependent, rigid-base models of B-form DNA
in solution is introduced. The hierarchy depends on both the assumed range of energetic …

DNA produces a wide range of structures in addition to the canonical B-form of double-
stranded DNA. Some of these structures are stabilized by Hoogsteen bonds. We developed …

Optical trapping and manipulation techniques have attracted significant attention in various
research fields. Optical forces divided into two terms, such as a scattering force and gradient …

DNA nanotechnology promises to provide controllable self-assembly on the nanoscale,
allowing for the design of static structures, dynamic machines and computational …

Electrokinetic phenomena in micro/nanofluidic channels have attracted considerable
attention because precise control of molecular transport in liquids is required to optically and …

Currently self-assembled DNA delivery systems composed of DNA multivalent cations and
anionic lipids are considered to be promising tools for gene therapy. These systems become …

The unique molecular recognition properties of DNA molecule, which store genetic
information in cells, are responsible for the rise of DNA nanotechnology. In this article, we …