Plant virus metagenomics: advances in virus discovery
MJ Roossinck, DP Martin, P Roumagnac - Phytopathology, 2015 - Am Phytopath Society
In recent years plant viruses have been detected from many environments, including
domestic and wild plants and interfaces between these systems—aquatic sources, feces of …
domestic and wild plants and interfaces between these systems—aquatic sources, feces of …
Methods in virus diagnostics: from ELISA to next generation sequencing
Despite the seemingly continuous development of newer and ever more elaborate methods
for detecting and identifying viruses, very few of these new methods get adopted for routine …
for detecting and identifying viruses, very few of these new methods get adopted for routine …
[HTML][HTML] Historical perspective, development and applications of next-generation sequencing in plant virology
M Barba, H Czosnek, A Hadidi - Viruses, 2014 - mdpi.com
Next-generation high throughput sequencing technologies became available at the onset of
the 21st century. They provide a highly efficient, rapid, and low cost DNA sequencing …
the 21st century. They provide a highly efficient, rapid, and low cost DNA sequencing …
Identification of viruses and viroids by next-generation sequencing and homology-dependent and homology-independent algorithms
Q Wu, SW Ding, Y Zhang, S Zhu - Annual review of …, 2015 - annualreviews.org
A fast, accurate, and full indexing of viruses and viroids in a sample for the inspection and
quarantine services and disease management is desirable but was unrealistic until recently …
quarantine services and disease management is desirable but was unrealistic until recently …
Current impact and future directions of high throughput sequencing in plant virus diagnostics
The ability to provide a fast, inexpensive and reliable diagnostic for any given viral infection
is a key parameter in efforts to fight and control these ubiquitous pathogens. The recent …
is a key parameter in efforts to fight and control these ubiquitous pathogens. The recent …
Synergies and antagonisms in virus interactions
T Mascia, D Gallitelli - Plant Science, 2016 - Elsevier
Metagenomic surveys and data from next generation sequencing revealed that mixed
infections among plant viruses are probably a rule rather than an exception in natural …
infections among plant viruses are probably a rule rather than an exception in natural …
Multiple polyadenylated RNA viruses detected in pooled cultivated and wild plant samples
RNA extracted from 120 leaf specimens from 17 plant species was pooled, and
polyadenylated RNA species were sequenced together without barcoding in one lane using …
polyadenylated RNA species were sequenced together without barcoding in one lane using …
Diagnosis and discovery of fungal viruses using deep sequencing of small RNAs
EJ Vainio, J Jurvansuu, J Streng… - Journal of general …, 2015 - microbiologyresearch.org
Analysis of virus-derived small RNAs with high-throughput sequencing has been successful
for detecting novel viruses in plants and invertebrates. However, the applicability of this …
for detecting novel viruses in plants and invertebrates. However, the applicability of this …
Association of Little cherry virus 1 (LChV1) with the Shirofugen Stunt Disease and Characterization of the Genome of a Divergent LChV1 Isolate
T Candresse, A Marais, C Faure, P Gentit - Phytopathology, 2013 - Am Phytopath Society
Double-stranded RNAs purified from the V2356 ('Successa') sour cherry source of the
Shirofugen stunt disease (SSD) were sequenced using a 454 pyrosequencing multiplex …
Shirofugen stunt disease (SSD) were sequenced using a 454 pyrosequencing multiplex …
[HTML][HTML] Passion fruit chlorotic mottle virus: molecular characterization of a new divergent geminivirus in Brazil
RS Fontenele, RA Abreu, NS Lamas… - Viruses, 2018 - mdpi.com
Brazil is one of the major passion fruit producers worldwide. Viral diseases are among the
most important constraints for passion fruit production. Here we identify and characterize a …
most important constraints for passion fruit production. Here we identify and characterize a …