Plant virus metagenomics: advances in virus discovery

MJ Roossinck, DP Martin, P Roumagnac - Phytopathology, 2015 - Am Phytopath Society
In recent years plant viruses have been detected from many environments, including
domestic and wild plants and interfaces between these systems—aquatic sources, feces of …

Methods in virus diagnostics: from ELISA to next generation sequencing

N Boonham, J Kreuze, S Winter, R van der Vlugt… - Virus research, 2014 - Elsevier
Despite the seemingly continuous development of newer and ever more elaborate methods
for detecting and identifying viruses, very few of these new methods get adopted for routine …

[HTML][HTML] Historical perspective, development and applications of next-generation sequencing in plant virology

M Barba, H Czosnek, A Hadidi - Viruses, 2014 - mdpi.com
Next-generation high throughput sequencing technologies became available at the onset of
the 21st century. They provide a highly efficient, rapid, and low cost DNA sequencing …

Identification of viruses and viroids by next-generation sequencing and homology-dependent and homology-independent algorithms

Q Wu, SW Ding, Y Zhang, S Zhu - Annual review of …, 2015 - annualreviews.org
A fast, accurate, and full indexing of viruses and viroids in a sample for the inspection and
quarantine services and disease management is desirable but was unrealistic until recently …

Current impact and future directions of high throughput sequencing in plant virus diagnostics

S Massart, A Olmos, H Jijakli, T Candresse - Virus research, 2014 - Elsevier
The ability to provide a fast, inexpensive and reliable diagnostic for any given viral infection
is a key parameter in efforts to fight and control these ubiquitous pathogens. The recent …

Synergies and antagonisms in virus interactions

T Mascia, D Gallitelli - Plant Science, 2016 - Elsevier
Metagenomic surveys and data from next generation sequencing revealed that mixed
infections among plant viruses are probably a rule rather than an exception in natural …

Multiple polyadenylated RNA viruses detected in pooled cultivated and wild plant samples

SJ Wylie, H Luo, H Li, MGK Jones - Archives of Virology, 2012 - Springer
RNA extracted from 120 leaf specimens from 17 plant species was pooled, and
polyadenylated RNA species were sequenced together without barcoding in one lane using …

Diagnosis and discovery of fungal viruses using deep sequencing of small RNAs

EJ Vainio, J Jurvansuu, J Streng… - Journal of general …, 2015 - microbiologyresearch.org
Analysis of virus-derived small RNAs with high-throughput sequencing has been successful
for detecting novel viruses in plants and invertebrates. However, the applicability of this …

Association of Little cherry virus 1 (LChV1) with the Shirofugen Stunt Disease and Characterization of the Genome of a Divergent LChV1 Isolate

T Candresse, A Marais, C Faure, P Gentit - Phytopathology, 2013 - Am Phytopath Society
Double-stranded RNAs purified from the V2356 ('Successa') sour cherry source of the
Shirofugen stunt disease (SSD) were sequenced using a 454 pyrosequencing multiplex …

[HTML][HTML] Passion fruit chlorotic mottle virus: molecular characterization of a new divergent geminivirus in Brazil

RS Fontenele, RA Abreu, NS Lamas… - Viruses, 2018 - mdpi.com
Brazil is one of the major passion fruit producers worldwide. Viral diseases are among the
most important constraints for passion fruit production. Here we identify and characterize a …