So many variables: joint modeling in community ecology

DI Warton, FG Blanchet, RB O'Hara… - Trends in ecology & …, 2015 - cell.com
Technological advances have enabled a new class of multivariate models for ecology, with
the potential now to specify a statistical model for abundances jointly across many taxa, to …

[HTML][HTML] An overview of modern applications of negative binomial modelling in ecology and biodiversity

J Stoklosa, RV Blakey, FKC Hui - Diversity, 2022 - mdpi.com
Negative binomial modelling is one of the most commonly used statistical tools for analysing
count data in ecology and biodiversity research. This is not surprising given the prevalence …

[图书][B] Joint species distribution modelling: With applications in R

O Ovaskainen, N Abrego - 2020 - books.google.com
Joint species distribution modelling (JSDM) is a fast-developing field and promises to
revolutionise how data on ecological communities are analysed and interpreted. Written for …

How to make more out of community data? A conceptual framework and its implementation as models and software

O Ovaskainen, G Tikhonov, A Norberg… - Ecology …, 2017 - Wiley Online Library
Community ecology aims to understand what factors determine the assembly and dynamics
of species assemblages at different spatiotemporal scales. To facilitate the integration …

A comprehensive evaluation of predictive performance of 33 species distribution models at species and community levels

A Norberg, N Abrego, FG Blanchet… - Ecological …, 2019 - Wiley Online Library
A large array of species distribution model (SDM) approaches has been developed for
explaining and predicting the occurrences of individual species or species assemblages …

sdmTMB: an R package for fast, flexible, and user-friendly generalized linear mixed effects models with spatial and spatiotemporal random fields

SC Anderson, EJ Ward, PA English, LAK Barnett - BioRxiv, 2022 - biorxiv.org
Geostatistical data—spatially referenced observations related to some continuous spatial
phenomenon—are ubiquitous in ecology and can reveal ecological processes and inform …

Guidance for decisions using the Vector Autoregressive Spatio-Temporal (VAST) package in stock, ecosystem, habitat and climate assessments

JT Thorson - Fisheries Research, 2019 - Elsevier
Fisheries scientists provide stock, ecosystem, habitat, and climate assessments to support
interdisplinary fisheries management in the US and worldwide. These assessment activities …

Biotic interactions in species distribution modelling: 10 questions to guide interpretation and avoid false conclusions

CF Dormann, M Bobrowski, DM Dehling… - Global ecology and …, 2018 - Wiley Online Library
Aim Recent studies increasingly use statistical methods to infer biotic interactions from co‐
occurrence information at a large spatial scale. However, disentangling biotic interactions …

Generalized joint attribute modeling for biodiversity analysis: Median‐zero, multivariate, multifarious data

JS Clark, D Nemergut, B Seyednasrollah… - Ecological …, 2017 - Wiley Online Library
Probabilistic forecasts of species distribution and abundance require models that
accommodate the range of ecological data, including a joint distribution of multiple species …

Comparing estimates of abundance trends and distribution shifts using single-and multispecies models of fishes and biogenic habitat

JT Thorson, LAK Barnett - ICES Journal of Marine Science, 2017 - academic.oup.com
Several approaches have been developed over the last decade to simultaneously estimate
distribution or density for multiple species (eg “joint species distribution” or “multispecies …