[HTML][HTML] Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary …

JF Dallery, N Lapalu, A Zampounis, S Pigné, I Luyten… - BMC genomics, 2017 - Springer
Abstract Background The ascomycete fungus Colletotrichum higginsianum causes
anthracnose disease of brassica crops and the model plant Arabidopsis thaliana. Previous …

[HTML][HTML] Distribution and functionality of copy number variation across European cattle populations

M Upadhyay, VH da Silva, HJ Megens… - Frontiers in …, 2017 - frontiersin.org
Copy number variation (CNV), which is characterized by large-scale losses or gains of DNA
fragments, contributes significantly to genetic and phenotypic variation. Assessing CNV …

[HTML][HTML] Genome-wide characterization and expression profiling of HD-Zip gene family related to abiotic stress in cassava

Z Ding, L Fu, Y Yan, W Tie, Z Xia, W Wang, M Peng… - PLoS …, 2017 - journals.plos.org
Homeodomain-leucine zipper (HD-Zip) gene family plays important roles in various abiotic
stresses and hormone signaling in plants. However, no information is currently available …

[HTML][HTML] Superoxide dismutase gene family in cassava revealed their involvement in environmental stress via genome-wide analysis

L Zheng, AA Hamidou, X Zhao, Z Ouyang, H Lin, J Li… - Iscience, 2023 - cell.com
Superoxide dismutase (SOD) is a crucial metal-containing enzyme that plays a vital role in
catalyzing the dismutation of superoxide anions, converting them into molecular oxygen and …

[HTML][HTML] Genome-wide analysis revealed the stepwise origin and functional diversification of HSDs from lower to higher plant species

N Saleem, U Aziz, M Ali, X Liu, KM Alwutayd… - Frontiers in Plant …, 2023 - frontiersin.org
Hydroxysteroid dehydrogenase (HSDs) is an oil-body sterol protein (steroleosin) with an
NADP (H) binding domain that belongs to the short-chain dehydrogenase/reductase (SDR) …

Identification of Phytocyanin Gene Family in Legume Plants and their Involvement in Nodulation of Medicago truncatula

Y Sun, Z Wu, Y Wang, J Yang, G Wei… - Plant and Cell …, 2019 - academic.oup.com
The establishment of symbiosis between legume and rhizobium results in the formation of
nodule. Phytocyanins (PCs) are a class of plant-specific blue copper proteins, playing critical …

An integrative transcriptomic and genomic analysis reveals novel insights into the hub genes and regulatory networks associated with rubber synthesis in H …

Z Ding, L Fu, D Tan, X Sun, J Zhang - Industrial crops and products, 2020 - Elsevier
Rubber tree (Hevea brasiliensis) is an important tropical plant that produces natural rubber;
however, the hub genes and regulatory networks associated with rubber synthesis remain …

[HTML][HTML] CNVs are associated with genomic architecture in a songbird

VH da Silva, VN Laine, M Bosse, K Oers, B Dibbits… - BMC genomics, 2018 - Springer
Background Understanding variation in genome structure is essential to understand
phenotypic differences within populations and the evolutionary history of species. A …

[PDF][PDF] Genomic analysis and expression investigation of steroleosin gene family in Arabidopsis thaliana.

U Aziz, N Saleem, T Tang, M Zhang - 2020 - thejaps.org.pk
Despite having growing evidence discussing the role of steroleosins in crop plants, their
systemic analysis has not been wor ed extensively. Therefore, bioinformatics tools were …

[HTML][HTML] Analysis of single nucleotide variants in CRISPR-Cas9 edited zebrafish exomes shows no evidence of off-target inflation

MR Mooney, EE Davis, N Katsanis - Frontiers in Genetics, 2019 - frontiersin.org
Therapeutic applications of CRISPR-Cas9 gene editing have spurred innovation in Cas9
enzyme engineering and single guide RNA (sgRNA) design algorithms to minimize potential …